LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre10g04802	ATGATGAACAATATCTCATCTGTGGCGTACATAAAACGGTTGGTTATTGAACTCGATAACCTTGAGCTCAGGGAAAATGCTCTTCGTGTGCTCTCCAAGAGGAAGGACTTATTTCATGAACTTGCACCTTTATTGTGGCATTCTGTTGGCACTATTGCAGTATTATTACTGGAAATAACTTCAATATATGATAATCTTTCACCACCAACTCTTTCTACTGCACAATCAACTCGAGTGTGCAATGTTCTTGCATTAGTTCAGTGTGTGGCATCTCACCCTGATACAAGGATGTTACTCATCAATGCTTTCATACCACAGTTTCTGTTTCCTTTCCTTGAAACGACATGTACCTTACCCCAATTTGACAATTTGAGGCTTGCGACTCTCGGAGTCATTGGTGTCTTGGTAAAGGCCAAAAGCAAAGAAGTTATAGATTATCTTCTTTCAACTGAAATCGTTCCATTATGTTTGCGTATCATGGAGATCGGGAAAGAAATGTCAAAAACTGTTGCTACTTTCATCCTACAAAAAATTTTGTTGGATGAAGATGGTCTTGCTTGTGTATGTGCTACCGCAGACCGTTTCTTTTTTGTATGTCGAATTTTGAATATGGTGATGGAAAAAATTCAAAGACAACCTTCACCTCGGCTTTTGAAACTTATAATTCCATGTTATGCTCGTTTGTCTCAAAATCCCGGCAGGGCTGGCGTTGCATTAACAAACTCTCTTCCGGCTGTGTTTGCTAACCCCGCTTTCATCAATTACCTTCGTGGAGATCCAGCAACTTGGAGTTGGGCAGAGCAATTGTATGAAAATATAAGGAAGAATGAAGTTCAGTCAGCACAATCTGAAATAAAAATGGATGGTATTATGTGGTACACATCATCAGGACAGAATAAATGA	903	0.3931	MMNNISSVAYIKRLVIELDNLELRENALRVLSKRKDLFHELAPLLWHSVGTIAVLLLEITSIYDNLSPPTLSTAQSTRVCNVLALVQCVASHPDTRMLLINAFIPQFLFPFLETTCTLPQFDNLRLATLGVIGVLVKAKSKEVIDYLLSTEIVPLCLRIMEIGKEMSKTVATFILQKILLDEDGLACVCATADRFFFVCRILNMVMEKIQRQPSPRLLKLIIPCYARLSQNPGRAGVALTNSLPAVFANPAFINYLRGDPATWSWAEQLYENIRKNEVQSAQSEIKMDGIMWYTSSGQNK	300

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre10g04802	300	Pfam	Cell differentiation family, Rcd1-like	14	273	-	-
	Trre10g04802	300	Gene3D	-	4	275	IPR011989	-
	Trre10g04802	300	PANTHER	UNCHARACTERIZED	8	277	IPR007216	GO:0006402\|GO:0030014
	Trre10g04802	300	FunFam	Cell differentiation family, Rcd1-like containing protein	2	275	-	-
	Trre10g04802	300	SUPERFAMILY	ARM repeat	16	235	IPR016024	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre10g04802	Trre-Chr10	56351710	56355169	Proximal

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Rcd1-like	Trre10g04802		Rcd1	6.1e-97	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre10g04802	K12606		-	mof:131164386	307.375