Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04771 ATGTTCTTGCAAAAGCCTTTCAAAATCAAGCAATTTTGTTCAGTTCATCCAGATCTGCCAATGGGGAAAAATGACTTTCTCACACCTAAGGCAATTGCCAATCGAATCAAAGCAAAAGGGCTGCAGAAACTTCGGTGGTATTGCCAGATGTGCCAGAAGCAGTGTCGTGATGAGAATGGTTTCAAATGCCATTGCATGAGTGAAGGACACCAACGCCAAATGCAAATTTTTGGACAAAACCCAACCCGCATAATTGAGGGCTATACTGAAGAGTTTGAGACTACATTTCTTGAGCATATGAAGCGCAGCCATCGATTCAGCCGTGTGGCTGCGACTGTAGTTTATAATGAATACATAAATGATAGAAACCACGTTCATATGAACTCCACGGAGTGGGCTACACTTACTGAGTTTGTTAAGTACTTGGGTCGAACTGGAAAGTGTAAGGTTGAAGAAACACCCAAGGGATGGTTCATTACATACATAGATAGAGATTCAGAAACTCTTTTCAAGGAGAAGATGAAGAATAAGAGAGTCAAGGCAGATTTGGTTGATGAAGAAAAGCAAGAGAAGGAGATCCAGAAACAGATTGAAAGGGCTGAGCAAATGATGCAGCAATCTAATCCCGAGTCTGAGCAGCCTTCACAGGTAGAGACCGCAAGGGAACTGAATGTAGAAGATGGAACTAAGATAGGATTTTCTCTTGGGTCATCAGCTAAACCTGCGACCAAGGAAAAAGGTGAGGCATCAAGGATAGTGTTTGATGAGGTTGATGAAGAGAAACACGAGGAAAGGAATCCAAAAAACAATTTGAAGAGGAAAGAAAGCGGTGGTGGAAAATCAACTTTGGAAGAAATGATCAAGGAGGAAGAGAGGAAAAAGGAAAAACTCAACAGGAAGGATTATTGGTTGCATGAGGGAATTGTTGTTAAGGTTATGAGCAAAGTCTTGGCAGAGAAGGGGTACTACAAGCAAAAGGGTGTTGTGAAAAAAGTGATTGACAAGTATGTCGGGGAAATAGAAATGCTAGAAAGCAAGCATGTTCTCAGAGTTGATCAGGAAGAGCTTGAAACTGTGATACCACAGGTTGGGGGCCGTGTGAAAATAGTCAACGGTGCTTATCGTGGATCACTTGCTAGGCTACTGGGGGTGGATACAGATCATTTTTGCGCTAAGGTGCAGATAGAGAAAGGTGCTTATGATGGCAGGGTGCTTAAAGCTGTGGAATATGAGGACATTTGTAAAGTAGCCTAA 1254 0.4234 MFLQKPFKIKQFCSVHPDLPMGKNDFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSEGHQRQMQIFGQNPTRIIEGYTEEFETTFLEHMKRSHRFSRVAATVVYNEYINDRNHVHMNSTEWATLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLFKEKMKNKRVKADLVDEEKQEKEIQKQIERAEQMMQQSNPESEQPSQVETARELNVEDGTKIGFSLGSSAKPATKEKGEASRIVFDEVDEEKHEERNPKNNLKRKESGGGKSTLEEMIKEEERKKEKLNRKDYWLHEGIVVKVMSKVLAEKGYYKQKGVVKKVIDKYVGEIEMLESKHVLRVDQEELETVIPQVGGRVKIVNGAYRGSLARLLGVDTDHFCAKVQIEKGAYDGRVLKAVEYEDICKVA 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04771 417 CDD KOW_KIN17 363 416 IPR041995 -
Trre10g04771 417 MobiDBLite consensus disorder prediction 244 286 - -
Trre10g04771 417 MobiDBLite consensus disorder prediction 202 221 - -
Trre10g04771 417 FunFam DNA/RNA-binding protein KIN17, putative 81 180 - -
Trre10g04771 417 Gene3D - 307 360 - -
Trre10g04771 417 MobiDBLite consensus disorder prediction 230 286 - -
Trre10g04771 417 Gene3D - 80 180 IPR038254 -
Trre10g04771 417 FunFam DNA/RNA-binding protein KIN17, putative 361 417 - -
Trre10g04771 417 FunFam DNA/RNA-binding protein kin17-like 307 360 - -
Trre10g04771 417 Coils Coil 280 300 - -
Trre10g04771 417 SUPERFAMILY beta-beta-alpha zinc fingers 46 86 IPR036236 -
Trre10g04771 417 Coils Coil 176 206 - -
Trre10g04771 417 Pfam Domain of Kin17 curved DNA-binding protein 72 197 IPR019447 -
Trre10g04771 417 Gene3D - 361 417 IPR014722 -
Trre10g04771 417 SMART Kin17_mid_2 72 198 IPR019447 -
Trre10g04771 417 PANTHER KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG 21 417 IPR037321 -
Trre10g04771 417 Pfam KN17 SH3-like C-terminal domain 299 352 IPR041330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04771 Trre-Chr10 56205445 56209729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04771 21 417 C2H2 Transcription Factor Family AT1G55460 70.673 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04771 K13102 - gmx:100784271 690.649