Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04770 ATGAGCTTCTTTTCATGTTGTAAGTTGCAAGAGAAGACCACCAAGAACTCATTGAAGAAAAACATTAAGGATTATCATAATGTTTGTTTCAAATCTGATAATGGCAAACGGAAGTACATAGTAGAGGAAGAAAATGAAAGTGATGGAAAAGGAAATATTACCTCTAAGATATTCACTTACCATGAGCTATGTGTTGCAACTAAGAATTTTCATGTCCACAATATGGTTGGTGAAGGAGGCTTTGGAAGAGTTTACAAAGGGCGCATTAAAAACATGGATAATAAGGTTGTTGCTGTAAAGAAACTTAACAAAAATGGATTTCAAGGAAGCAGAGAATTTCTTGCAGAGGTTATGATTTTAAGTTTTTTGCACCACAATAACCTTGTCAACTTGGTAGGGTATTGTAGTGAAGGTGATCAAAGGATTTTGGTATATGAGTACATGGCAAATGGTTCTTTAGAAGATCACCTCTTTGAGTTACCTCCTAGTAAAAAGCCTTTGGATTGGCACACTAGAATGAAAATTGCAGAAGGGAGAAGAGTGCTTGATTATTCAAGACCATCTGAAGAGGAAAACTTGGTCGTTTGGGCATTACCACTACTCAAAAACAAAAGAAAATATACATCATTGGTTGATCCATTGTTAAAAGGGAACTACCCAATGAGGGGCCTATACCAAGCACTAGCAATTGCATCAATGTGTCTATTGGAGGATGCTACTGCTAGACCTTTGATTGGTGATGTAGTCACAGCTCTTGGAGTTTTAGCAATGAGGCATGTACAAGTGGGAAAACAAAAACATACAAAAGAAACTTGTATTGAACAAGGAGAATGCAGTTGA 840 0.3667 MSFFSCCKLQEKTTKNSLKKNIKDYHNVCFKSDNGKRKYIVEEENESDGKGNITSKIFTYHELCVATKNFHVHNMVGEGGFGRVYKGRIKNMDNKVVAVKKLNKNGFQGSREFLAEVMILSFLHHNNLVNLVGYCSEGDQRILVYEYMANGSLEDHLFELPPSKKPLDWHTRMKIAEGRRVLDYSRPSEEENLVVWALPLLKNKRKYTSLVDPLLKGNYPMRGLYQALAIASMCLLEDATARPLIGDVVTALGVLAMRHVQVGKQKHTKETCIEQGECS 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04770 279 Gene3D Transferase(Phosphotransferase) domain 1 51 181 - -
Trre10g04770 279 FunFam Serine/threonine-protein kinase CDL1-like 41 147 - -
Trre10g04770 279 PANTHER OS07G0668900 PROTEIN 4 178 - -
Trre10g04770 279 ProSiteProfiles Protein kinase domain profile. 70 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04770 279 Gene3D Transferase(Phosphotransferase) domain 1 182 276 - -
Trre10g04770 279 SUPERFAMILY Protein kinase-like (PK-like) 49 176 IPR011009 -
Trre10g04770 279 ProSitePatterns Protein kinases ATP-binding region signature. 76 101 IPR017441 GO:0005524
Trre10g04770 279 Pfam Protein tyrosine and serine/threonine kinase 71 176 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04770 Trre-Chr10 56202141 56205393 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04770 173 256 Glycoside Hydrolase AT3G07070 51.190 8.08e-25 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Trre10g04770 PK_Tyr_Ser-Thr 8e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04770 - - gmx:100798032 268.855