Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04757 ATGGAGTTCAATATACTTTTTTTGTTACTTCTCATTGGTTCTACTTCATTGATTTTCATCTCACACTTGGCTTCAGCTGCTACACCAAAGCTCAACACTCTAGAGGTGAAAGCATTGAAGGAAATAGGGAACAAGATTGGGAAAAAAGATTGGGATTTTGGATTAGATCCTTGCAGTGGAAAAGGAAAATGGAATATTTCTGAATCTCCTAATAGAAAAGGCTTTGAGAGTTCTGTGATTTGTGATTGTTCTTTCAACCAAAATTCTTCTTGCCATGTTGTAAGCATATTCTTGAAGGCTCAAAATCTATCTGGCACTTTCTCACCAGAGTTTTCAAAGCTTCGTTATCTCAAAATATTGGACCTTAGTCGTAACATCATCACCGGTTCTATACCTCCACAATGGGCTACAATGAAGTTGACTGAGTTATCTTTCATGGGAAACAGATTATCAGGACCATTCCCTAAAGTTCTTACCAATATTACAACTCTAAAAAATGTGAGTATTGAAGGAAATCAGTTTTCAGGCATCATTCCAACCGAAATCGGGAAGTTGGTCAACTTAGAAAAACTCATTCTGCAATCAAATGGATTCACAGGTGCATTGCCGTTCGCGCTTTCCAAGTTGACCAAGTTGACCAAGTTGACTGATTTGAGAGTAAGCGACAATAGCTTCTACGGGAAGATACCTGATTTCATCAGTAAATGGACAGTGATCGAAAAGCTGCACATTCAAGGTTGCTCTCTTGAAGGACCTATACCTTCCAGCATTTCTGCATTGACAAAATTAAGCGATTTGAGGATAACTGATTTGAAAGGTAGCAAAAGCTCTAATTTTCCACCACTAAATAATATGAAATCCATGAAGACACTAGTTTTGAGAAAATGCTTCCTTAAAGGAGAGATTCCGGAATATATCGGAGAAATGGAAAAACTGAAAATCTTAGATTTGAGTTTCAATAGCTTGAGTGGAAAGATACCTGAATCCTTTGACGATCTCGACAAAGTGGACTACATGTATCTTACTTCGAACAACTTATCAGGAACGATACCGAGCTGGGTCCTCGCAAATAACAAAAATATTGATGTCTCTTACAATAACTTTGAATGGGAAAGCTCGAGTCCAACTGAATGTCAACGAGGGAGCGTAAACACGGCTGAGAGCTACTCTTTATCGGCGACTAAGAAAAGTAATATTCATTCATGCTTAAAAAGAAACTTCCCATGCATGTCGGATAATCCACGACATTACTCCTTGCGCATTAATTGTGGCGGTAATGAAGCAAATGTAAGTGGTACCATCTATAATGCTGACACAGAACGAAAAGGCGCTTCAATGTTCTACACCAGTCAGGATTGGGCTCTTAGCAGCACAGGGGGTTTCATGGATAATGATCTTGACTCTGATCCTTATATTGTGACCAATACTTCTAGACTTCTTAATGTCTCCCGAATCAATTCAAAACTGTACACAACAGCTCGAGTTTCGCCCCTTGCACTCACATACTACGGCCTTTGTATGATAAATGGAAATTACACTGTAAGACTTCACTTTGCAGAGATCATTTTCGTCAATGATAGGTCATTTAACAGTCTTGGGAGACGAATATTTGATGTCTACATCCAGGGGAACTTGGTTCTGAAAGACTTTGATATCGAACGAGAAGCTGGTGGTGCCGAAAAGCCAATCGTGAAGATATTTAATGCTTCTGTCACACAGAATACTTTGAAGATTCAATTCTATTGGGCTGGAAAAGGAACCACCGGTATACCAACAAGAGGAGTTTATGGTCCTTTAATATCTGCTATATCAGTTGATCCTAATTTTAAACCTCCATCGGATCATGGCAACAGAAACAAGGTCTTAATACTGGCAGTTGGCATAGCCAGTGGTGTTCTAGTTGTTGTTCTTATTATGCTGATTGTCTTGAGGAGGAAGGGATTGTTAGGAGGCAAGGATCCTGTGTATAAAGAGCTTAGGGGTATGGATCTGCAAACAGGATTGTTCACTTTAAGACAAATAAAAGAAGCCACCAAAAACTTCGATGTAGCAAATAAACTTGGCGAAGGTGGCTTTGGTTCTGTTTACAAGGGGCAACTACCAGATGGTACAGTAATTGCAGTAAAGCAGCTGTCGTCAAAATCAAAACAAGGAAACCGCGAGTTTGTGAATGAGATAGGAATGCTATCTGGACTTCAACATCCAAATCTTGTTAAGCTTCATGGATGTTGTGTGGAAGGGAACCAGCTAATACTGATATATGAGTATATGGAAAATAATTGTCTATCCCGCATTCTTTTCGGGAGGGGATCAGACAGTAAAGCGAAACTGGACTGGCTTACCAGGAAGAAAATTTGCCTCGGCATTGCTAAAGCTTTGGCTTATCTTCATGAAGAGTCAAGAATCAAAATCATACATAGGGATATAAAGGCGAGTAATGTGTTGCTGGACAAGGATTTTAATGCCAAAATCTCAGATTTTGGTTTGGCCAAACTTATTGAAGATGACAAAACACATGTTAGCACCCGGATTGCAGGAACAATTGGTTATATGGCTCCTGAGTATGCAATGCGCGGTTACTTAACCGACAAAGCAGATGTTTATAGCTTTGGCGTGGTTGCATTGGAAACTGTCAGTGGAAAGAGCAATACAAATTACAGGCCGGACGATGAATTTTTCTACCTTCTTGATTGGGCCTATGTTTTACAAGAGAGAGGAACTCTTCTGGAGCTAGTTGATCCAGATTTGGGTTCAGAATATTCGACTGAGGAAGCCACAGTAATGCTAAATGTGGCTCTCTTGTGTACTAATGCATCTCCTACACTTAGGCCAACAATGTGCCAAGTTGTAAGCATGCTTGAAGGTTGGACCGACATTCAGGATCTTCTATCGGATCCGGGATATTCAGCTGCTGGTTCAAGTTCCAAACATAAGAGCATAAGAAGTCACTTTTGGGAGAATCCAAGCAGATCACAAAGCATGTCAATACCTACTATTTATACCGATTCCACAAACTCGCATGTTGAAACAGAAGAGAGCCATCATCTTGTAAAAATTAACTCGGTTGGATCGGACAAATGA 3081 0.3992 MEFNILFLLLLIGSTSLIFISHLASAATPKLNTLEVKALKEIGNKIGKKDWDFGLDPCSGKGKWNISESPNRKGFESSVICDCSFNQNSSCHVVSIFLKAQNLSGTFSPEFSKLRYLKILDLSRNIITGSIPPQWATMKLTELSFMGNRLSGPFPKVLTNITTLKNVSIEGNQFSGIIPTEIGKLVNLEKLILQSNGFTGALPFALSKLTKLTKLTDLRVSDNSFYGKIPDFISKWTVIEKLHIQGCSLEGPIPSSISALTKLSDLRITDLKGSKSSNFPPLNNMKSMKTLVLRKCFLKGEIPEYIGEMEKLKILDLSFNSLSGKIPESFDDLDKVDYMYLTSNNLSGTIPSWVLANNKNIDVSYNNFEWESSSPTECQRGSVNTAESYSLSATKKSNIHSCLKRNFPCMSDNPRHYSLRINCGGNEANVSGTIYNADTERKGASMFYTSQDWALSSTGGFMDNDLDSDPYIVTNTSRLLNVSRINSKLYTTARVSPLALTYYGLCMINGNYTVRLHFAEIIFVNDRSFNSLGRRIFDVYIQGNLVLKDFDIEREAGGAEKPIVKIFNASVTQNTLKIQFYWAGKGTTGIPTRGVYGPLISAISVDPNFKPPSDHGNRNKVLILAVGIASGVLVVVLIMLIVLRRKGLLGGKDPVYKELRGMDLQTGLFTLRQIKEATKNFDVANKLGEGGFGSVYKGQLPDGTVIAVKQLSSKSKQGNREFVNEIGMLSGLQHPNLVKLHGCCVEGNQLILIYEYMENNCLSRILFGRGSDSKAKLDWLTRKKICLGIAKALAYLHEESRIKIIHRDIKASNVLLDKDFNAKISDFGLAKLIEDDKTHVSTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALETVSGKSNTNYRPDDEFFYLLDWAYVLQERGTLLELVDPDLGSEYSTEEATVMLNVALLCTNASPTLRPTMCQVVSMLEGWTDIQDLLSDPGYSAAGSSSKHKSIRSHFWENPSRSQSMSIPTIYTDSTNSHVETEESHHLVKINSVGSDK 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04757 1026 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 236 384 - -
Trre10g04757 1026 Gene3D Ribonuclease Inhibitor 212 409 IPR032675 -
Trre10g04757 1026 Pfam Protein tyrosine and serine/threonine kinase 683 953 IPR001245 GO:0004672|GO:0006468
Trre10g04757 1026 Gene3D Ribonuclease Inhibitor 48 211 IPR032675 -
Trre10g04757 1026 FunFam Putative LRR receptor-like serine/threonine-protein kinase 757 965 - -
Trre10g04757 1026 CDD STKc_IRAK 687 955 - -
Trre10g04757 1026 SUPERFAMILY Protein kinase-like (PK-like) 664 980 IPR011009 -
Trre10g04757 1026 ProSiteProfiles Protein kinase domain profile. 681 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04757 1026 Pfam Malectin domain 418 603 IPR021720 -
Trre10g04757 1026 SMART serkin_6 681 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04757 1026 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 651 756 - -
Trre10g04757 1026 Gene3D Transferase(Phosphotransferase) domain 1 757 965 - -
Trre10g04757 1026 Gene3D - 415 607 - -
Trre10g04757 1026 ProSitePatterns Protein kinases ATP-binding region signature. 687 709 IPR017441 GO:0005524
Trre10g04757 1026 Pfam Leucine rich repeat 287 346 IPR001611 GO:0005515
Trre10g04757 1026 ProSitePatterns Serine/Threonine protein kinases active-site signature. 804 816 IPR008271 GO:0004672|GO:0006468
Trre10g04757 1026 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 12 993 - -
Trre10g04757 1026 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 37 202 - -
Trre10g04757 1026 Gene3D Phosphorylase Kinase; domain 1 654 756 - -
Trre10g04757 1026 SUPERFAMILY L domain-like 80 368 - -
Trre10g04757 1026 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 416 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04757 Trre-Chr10 56103832 56111731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04757 218 1017 Receptor kinase-like Gene Family AT1G07650 63.321 0.0 1000
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre10g04757 PK_Tyr_Ser-Thr 4.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04757 - - gmx:100784864 1654.8