Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04738 ATGGAAGAAGAAAACATAGAAACAGTGAGAAACAGAACCATACCAGCATTTCTCATCCAAAATATGAACACTACTAGTACTACTATTGCTGCTACTACCACTCAAAAGTCTCTGCATGTCTTCCGACGAAGCGGAAGACGGTGCAGAGAGAGTGGTAGTAAGGAGATGATGTTGATAAAGGAAGATGCTGAGGAGAAAGAAGAAGATGAAGAAAATGAAGAAGGTGGTGATGATGATAGAGAAGAGATAGAGAGAAAGATTCATGCATTGCAAAAGATTGTACCTAATGGTGAGTCTTTTGGTGTGGACAAACTTTTTGATGAAACTGCTGGCTATATTATTGCTTTACAGTATCAAGTCAAAGCTTTGAAAGCTCTTACTGGTTTCTTTGAAAAGTTGGAGAAAGATAAGACTAAACTTGGAGGTTGA 429 0.3823 MEEENIETVRNRTIPAFLIQNMNTTSTTIAATTTQKSLHVFRRSGRRCRESGSKEMMLIKEDAEEKEEDEENEEGGDDDREEIERKIHALQKIVPNGESFGVDKLFDETAGYIIALQYQVKALKALTGFFEKLEKDKTKLGG 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04738 142 CDD bHLH_AtIBH1_like 81 127 IPR044549 GO:0006355
Trre10g04738 142 MobiDBLite consensus disorder prediction 49 81 - -
Trre10g04738 142 MobiDBLite consensus disorder prediction 62 78 - -
Trre10g04738 142 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 44 130 IPR044660 GO:0006355
Trre10g04738 142 Coils Coil 53 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04738 Trre-Chr10 55966329 55966757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04738 37 130 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G47270 28.421 1.18e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04738 - - mtr:11429968 171.014