Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04736 ATGAGAAGGAACTTTGAATTAGAGAAGAAATCACTGGACATGGACTTTTTCTCGGATTATGGTGATGCCAACCGGTATAAAATTCAAGAAGTAATTGGGAAAGGTAGTTATGGCGTTGTTTGTTCAGCTGTTGATACTCATACTGGTGAGAAAGTTGCAATTAAAAAGGTTCATGGTATCTTTGAGCACATATCCGACGCTGCACGTATTCTTCGTGAGATAAAGTTGCTCAGACTTCTTCGACATCCTGATATTGTTGAAATTAAGCACATTATGTTGCCTCCTTCAAGCAGAGAATTCAAAGATATTTATGTTGTTTTTGAGCTTTTGGAATCTGATCTGCATCAAGTCATTAAAGCCAATGCCGACTTAACAAAAGAGCACTATCAGTTTTTTCTTTATCAGTTACTTCGAGCATTGAAGTATATTCACACCGCAAATGTCTATCATCGAGACTTGAAGCCAAAGAATATACTGGCCAATGCAAACTGTAAACTTAAAATCTGTGATTTTGGGTTAGCTAGAGTTGCTTTCAGTGACACTCCAACAACTGTATTTTGGACGGACTATGTTGCTACAAGGTGGTATAGAGCACCCGAGCTCTGTGGATCATTTTACTCAAAGTATACGCCGGCAATTGATATTTGGAGTATAGGATGCATCTTTGCTGAAGTATTGATAGGAAAACCACTTTTCCCCGGAAAAAGTGTTGTGCATCAGTTGGATCTGATCACAGATCTGCTTGGAACCCCCTCAATGGATACTATATCTCGGGTACGCAATGATAAAGCAAGGAGATACCTAACTAGTATGAGGAAAAAGCAGCCTATACCATTTGCACAAAAATTTCCTAATGCAGATCCTTTATCACTACGGCTACTGGAAAGGTTGCTCGCATTTGATCCAAAAGACCGGCCTACTGCTGAAGAGGCATTAGCTGATCCTTACTTCAAGGGACTTGCAAAAATTGAAAGAGAACCATCCTGCGAGCCCATTACACAAATGGAGTTTGAATTTGAAAAGAGAAGAGTAACAAAGGGAGAAATCCGAGACTTGATTTTCCATGAGATTCTAGAGTACCATCCTCAACTAAATGGAACAGAGAGAACTAATTTTCTTTATCCAAGTGCTGTTGATCAATTTGACAAGCAGTTTACTCATCTTGAGGAGACTGGTGGTAAAAGTGATCCTGTTGTGCCACTTGAAAGAAAACATGCATCTCTTCCCAGGTCAACAATCGTACATTCAAATATGACACCCCAAAAGGAGCATTCGAATATTGCTTCCAGTAAAAACCGGCAAATAACTGAGGAATATAATACTAAATATACGGAATCCAGCGGCATCCGGGGACTGCAAATAATTCCACTGGAAACACCTGGTAAAGTTGTTAGGCCAGTTGTTAAATATGAGCATGGGAGTATTGTCAATGATTCATATGATTCCAGAACATCAATAAGAGGCAAAACATATCCAACGGTGTTGAATCAAGGCCGAAGTAGCATCAAGTTTAACCATAAGTATTGA 1527 0.3936 MRRNFELEKKSLDMDFFSDYGDANRYKIQEVIGKGSYGVVCSAVDTHTGEKVAIKKVHGIFEHISDAARILREIKLLRLLRHPDIVEIKHIMLPPSSREFKDIYVVFELLESDLHQVIKANADLTKEHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTVFWTDYVATRWYRAPELCGSFYSKYTPAIDIWSIGCIFAEVLIGKPLFPGKSVVHQLDLITDLLGTPSMDTISRVRNDKARRYLTSMRKKQPIPFAQKFPNADPLSLRLLERLLAFDPKDRPTAEEALADPYFKGLAKIEREPSCEPITQMEFEFEKRRVTKGEIRDLIFHEILEYHPQLNGTERTNFLYPSAVDQFDKQFTHLEETGGKSDPVVPLERKHASLPRSTIVHSNMTPQKEHSNIASSKNRQITEEYNTKYTESSGIRGLQIIPLETPGKVVRPVVKYEHGSIVNDSYDSRTSIRGKTYPTVLNQGRSSIKFNHKY 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04736 508 SMART serkin_6 26 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04736 508 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 25 366 - -
Trre10g04736 508 Pfam Protein kinase domain 26 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04736 508 SUPERFAMILY Protein kinase-like (PK-like) 22 321 IPR011009 -
Trre10g04736 508 FunFam Mitogen-activated protein kinase 16 120 - -
Trre10g04736 508 Gene3D Phosphorylase Kinase; domain 1 41 363 - -
Trre10g04736 508 ProSitePatterns MAP kinase signature. 61 164 IPR003527 GO:0004707|GO:0005524|GO:0006468
Trre10g04736 508 ProSitePatterns Protein kinases ATP-binding region signature. 32 56 IPR017441 GO:0005524
Trre10g04736 508 ProSiteProfiles Protein kinase domain profile. 26 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04736 508 Gene3D Transferase(Phosphotransferase) domain 1 112 340 - -
Trre10g04736 508 CDD STKc_TDY_MAPK 25 362 - -
Trre10g04736 508 FunFam Mitogen-activated protein kinase 112 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04736 Trre-Chr10 55952921 55957888 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04736 8 432 MAP Kinase Gene Family AT2G42880 83.953 0.0 748
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Trre10g04736 Pkinase 4.9e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04736 - - tpra:123882256 954.51