Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04729 ATGTTTGGTGAAATGGAACACAAACAAGAACAAGACAATGGTAATCAGAATAATAATATGTCTGGTATTGATGTTACTCTAATATCTGCTAAAGTTCCGAAATCAGTTTCACCAGTTTCTTCTGCAGCTGAGGGAGAGACTTTAAAGCGGCCTCGCGGTCGACCGGCCGGATCGAAAAACAAGCCTAAGCCACCAATCATTGTCACTAGAGATAGTGCAAATGCACTTAAAGCTCATGCTATGGAAGTGAGCTCTGGCTGTGATGTGAACGAGAGTTTGTTGAACTTTGCAAGGAGAAAGCAACGTGGTCTTTGTATACTTAATGGCACTGGTTGTGTAACAAATGTAACGCTGCGACAACCGGCTTCATCTGGTGCAATTGTTACCCTTCATGGTCGATTTGAGATTCTCTCGTTGTTGGGGTCGATTCTTCCCCCACCAGCACCACCAGGAATCACTGGTCTAACAATTTATTTAGCAGGTGCTCAAGGACAAGTTGTGGGAGGTGCTGTAGTTGGCGCTTTGATTGCTTCAGGACCTGTTGTGATCATGGCTGCATCATTCATGCACGCTACTTTCGATCGTCTGCCACTTGAAGACGATGAACTTGCTGCTGCTATGCAGAATCAGCATTACCAAAATGGACGCACGCAACATCATCTTGATATCTCTGACTTATATGCAATGCCACAGAACCTCCTCATGAATGGTGCAATGCCTCCCGAGATATACTCTTGGGCACCAGGGAGAAACTTGTCAAAAACCTGA 768 0.4505 MFGEMEHKQEQDNGNQNNNMSGIDVTLISAKVPKSVSPVSSAAEGETLKRPRGRPAGSKNKPKPPIIVTRDSANALKAHAMEVSSGCDVNESLLNFARRKQRGLCILNGTGCVTNVTLRQPASSGAIVTLHGRFEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGGAVVGALIASGPVVIMAASFMHATFDRLPLEDDELAAAMQNQHYQNGRTQHHLDISDLYAMPQNLLMNGAMPPEIYSWAPGRNLSKT 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04729 255 Gene3D - 75 220 - -
Trre10g04729 255 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 17 219 IPR014476 GO:0003680
Trre10g04729 255 PIRSF ESCAROLA 2 249 IPR014476 GO:0003680
Trre10g04729 255 ProSiteProfiles PPC domain profile profile. 73 211 IPR005175 -
Trre10g04729 255 MobiDBLite consensus disorder prediction 1 66 - -
Trre10g04729 255 FunFam AT-hook motif nuclear-localized protein 76 217 - -
Trre10g04729 255 SUPERFAMILY AF0104/ALDC/Ptd012-like 73 205 - -
Trre10g04729 255 Pfam Plants and Prokaryotes Conserved (PCC) domain 78 188 IPR005175 -
Trre10g04729 255 CDD DUF296 79 159 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04729 Trre-Chr10 55896826 55897593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04729 5 254 AT-hook Motif Nuclear Localized (AHL) Family AT2G42940 68.254 4.79e-107 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04729 - - gmx:100804941 406.371