Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04725 ATGCACAATGCAGGAGGCTCCTCTCACCCTTTCTCCAGCAATGGAGAAACATACTCACCAAGTAGACCATTACTCATCAAGGAACAATCATTCCATGATCTTGCTCCTTCACCATCACTGCCTCAATCTACTTCTCATCGTATCATCAATGACGCGAAAAACCCTTCTTTTATCAACCTCATAGCCAACTTGAGCATCACGAATACAAAGATTACTCATCGCTCCTGCTCTGCTCCGTCAGTATTATTCACCGACATGAGAGTTGATTTTCATGAGCCATCTGATCATATACCTGCATATAGGCCCTCAACTTTAATAGTTAGACTATCTTTCATTATTCTTTTCTTCTATGTGGCTATTGGTGTTACAGTTTACATGATAAGTGAGAATTTCAAGGGCACTACCACATTCAGACCTGTAGATGCTGTGTATTTCACAGTGGTAACTTTATGCACTATTGGATATGGAGATATTGTTCCTGATACCATATTTGCAAAAATGTTTACATGTGGTTTCATTTTGGTGGGTTTTGGATTTATTGGTTTTATGCTTAATGAATTAGTTGTATACATTTGTGATACACATGAGGCATTCTTATTGAGCATGATGGATGAGGATAGATACAAGAAAATTATAAGGACTTGTATGTTTGATGAAGAGAAAGGAAGAATGAGGATAAGAACCAAAGTTTGTGGTGCTTTGGTTGTTGTCATTGTCTGCATTGCTATTGGAACGGTCACAGCACACTTTGTCGAGGATCTTAATTGGGCCGACAGTTTTTATCTCTCTGTTGTTTCTGTTACAACAGTTGGTTATGGAGACTATGATTTCAAAACTTTAACTGGAAGATGTTTTGCGATTCCGTGGCTTTTGGTAAGCACATTCGCAGTTACAAGGTCATTTCTATACCTAACTGATTACAGCTTGCAAAAGAGAAGCCGCGAGATGACAAAATGGATTCTTCAGAAGAAAATTACCTTATCAGATTTAGCGGCTGCAGATCTTGATCATGATGGATCAATCAGTAAGTCTGACTTTGTCATATACAAGCTTAAGCAAATGGGGAAGATTACTGAGATCGACATTCTGCAAATTAGCAAGCAATTTGATTCATTGGACCATGGCATGTATGGCAAGATCACTCTAGCTGACCTCATGGAAACTGTCTAA 1170 0.3863 MHNAGGSSHPFSSNGETYSPSRPLLIKEQSFHDLAPSPSLPQSTSHRIINDAKNPSFINLIANLSITNTKITHRSCSAPSVLFTDMRVDFHEPSDHIPAYRPSTLIVRLSFIILFFYVAIGVTVYMISENFKGTTTFRPVDAVYFTVVTLCTIGYGDIVPDTIFAKMFTCGFILVGFGFIGFMLNELVVYICDTHEAFLLSMMDEDRYKKIIRTCMFDEEKGRMRIRTKVCGALVVVIVCIAIGTVTAHFVEDLNWADSFYLSVVSVTTVGYGDYDFKTLTGRCFAIPWLLVSTFAVTRSFLYLTDYSLQKRSREMTKWILQKKITLSDLAAADLDHDGSISKSDFVIYKLKQMGKITEIDILQISKQFDSLDHGMYGKITLADLMETV 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04725 389 Pfam Ion channel 112 189 IPR013099 -
Trre10g04725 389 Pfam Ion channel 236 305 IPR013099 -
Trre10g04725 389 PRINTS Two pore domain K+ channel signature 148 176 IPR003280 GO:0005267|GO:0016020|GO:0071805
Trre10g04725 389 PRINTS Two pore domain K+ channel signature 268 277 IPR003280 GO:0005267|GO:0016020|GO:0071805
Trre10g04725 389 SUPERFAMILY Voltage-gated potassium channels 101 191 - -
Trre10g04725 389 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 140 364 IPR003280 GO:0005267|GO:0016020|GO:0071805
Trre10g04725 389 ProSitePatterns EF-hand calcium-binding domain. 334 346 IPR018247 -
Trre10g04725 389 FunFam Two-pore potassium channel 2-like 208 332 - -
Trre10g04725 389 SUPERFAMILY Voltage-gated potassium channels 207 324 - -
Trre10g04725 389 Gene3D - 191 333 - -
Trre10g04725 389 Gene3D - 99 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04725 Trre-Chr10 55874164 55875972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04725 73 387 Ion Channels AT4G18160 48.101 3.08e-99 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04725 K05389 - gmx:100789639 514.612