Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04705 ATGTCATCCAAGAACTCTTTGGATGTGGAATTGTCGAAGACGTCCTTTTTGGGTTTGCAAAGATGGGTTTTGATTGGGATAGGTTTTGGTGCATTTATAGTGGTGATTCTTTGTATATTGTCTATATGGGTGCTGTTTCGGAGGAAGTCTAGGGGTAGGAGATCTTTGGACACGTCCCAAATACCGAATGTGTCGAAAGATATCAATGTTGACAAGGTTGGTGTGCAGAATTCTCATGTTCAACATGGAAATATGTTTGTTCCTGATGATAATAATTCGGACAAGATATCGATTCATATGAGGACGAGTAAACACAGTGATCCTGATAGTGCAAGTCATTGCAGTTCAGTTTATCATCACGAGAGAGGATTGAGTGCGCTTTCATGGGAAGAAGGGAGCTCTGGGAATTATAAGAAGCAGTCTACATTGTCATATGGAGGAGGGCCAATGGCTTCTCCCTCTCCTTTGATTGGTTTGCCGGAATTTTCTCATCTTGGTTGGGGCCACTGGTTTACACTTAGAGATCTTGAACAAGCAACCAATTGTTTCTCGGCTGAGAACGTTCTCGGTGAGGGTGGATATGGAGTTGTTTACAAGGGAAGACTGATCAACGGAACCGAGGTAGCAGTGAAGAAACTTCTTAACAACTTGGGTCAAGCAGAGAGAGAATTCAGGGTTGAAGTGGAGGCTATAGGCCATGTTAGACATAAGCATCTTGTGCGCCTGCTTGGATATTGCGTAGAAGGAGTTCACAGGCTGCTGGTGTACGAATATGTGAACAATGGTAACTTAGAACAATGGTTACATGGCGACAAGTACCAACTTGGGACACTTACCTGGGAGGCCCGCATGAAAGTTATACTTGGCACAGCCAAAGCGCTTGCTTACTTACATGAAGCGATTGAGCCAAAAGTTATTCACCGGGATATAAAGTCTAGCAACATATTGATCGATAATGAGTTCAATGCAAAGGTTTCTGATTTCGGTTTGGCCAAACTTTTGGAATCAGGAGAAAGTTACATAACTACTAGAGTAATGGGAACCTTTGGTTACGTAGCACCAGAATACGCCAACAGTGGTTTGTTAAATGAGAAGAGTGATATTTACAGCTTCGGTGTCCTCTTGCTGGAAGCGGTTACCGGCAGGGACCCTGTAGACTATGCGCGTCCTTCTAATGAGGTTAATCTTGTTGAATGGCTCAAGATGATGGTGGGGGCAAGGAGAGCCGAGGAAGTTGTGGACTCGAGCATTGAAGTTAAACCATCTGCACGTGCTTTAAAACGTTCCCTTCTAGTTGCACTTAGGTGTATTGATCCTGATGCTGACAAAAGGCCTAAAATGAGTCAAGTTGTTAGGATGCTTGAAGCTGATGAATATCCATTTCGAGAGGATCGAAGGAATAGAAAGAGCACGACTACCAGCTTCGAAATTGAAACGGTGAAGGAAATTTCTGATCAAGGTGATGTTGAAAAGGCGGAGCATGTGCCAGAAACAACTCAAGGAAAGGATTGA 1512 0.4358 MSSKNSLDVELSKTSFLGLQRWVLIGIGFGAFIVVILCILSIWVLFRRKSRGRRSLDTSQIPNVSKDINVDKVGVQNSHVQHGNMFVPDDNNSDKISIHMRTSKHSDPDSASHCSSVYHHERGLSALSWEEGSSGNYKKQSTLSYGGGPMASPSPLIGLPEFSHLGWGHWFTLRDLEQATNCFSAENVLGEGGYGVVYKGRLINGTEVAVKKLLNNLGQAEREFRVEVEAIGHVRHKHLVRLLGYCVEGVHRLLVYEYVNNGNLEQWLHGDKYQLGTLTWEARMKVILGTAKALAYLHEAIEPKVIHRDIKSSNILIDNEFNAKVSDFGLAKLLESGESYITTRVMGTFGYVAPEYANSGLLNEKSDIYSFGVLLLEAVTGRDPVDYARPSNEVNLVEWLKMMVGARRAEEVVDSSIEVKPSARALKRSLLVALRCIDPDADKRPKMSQVVRMLEADEYPFREDRRNRKSTTTSFEIETVKEISDQGDVEKAEHVPETTQGKD 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04705 503 MobiDBLite consensus disorder prediction 481 503 - -
Trre10g04705 503 ProSitePatterns Protein kinases ATP-binding region signature. 189 212 IPR017441 GO:0005524
Trre10g04705 503 Gene3D Transferase(Phosphotransferase) domain 1 259 472 - -
Trre10g04705 503 ProSiteProfiles Protein kinase domain profile. 183 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04705 503 Pfam Protein kinase domain 185 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04705 503 SUPERFAMILY Protein kinase-like (PK-like) 163 456 IPR011009 -
Trre10g04705 503 SMART serkin_6 183 454 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04705 503 Gene3D Phosphorylase Kinase; domain 1 165 258 - -
Trre10g04705 503 CDD STKc_IRAK 189 455 - -
Trre10g04705 503 PANTHER OS01G0323000 PROTEIN 1 478 - -
Trre10g04705 503 FunFam Putative receptor-like protein kinase 165 258 - -
Trre10g04705 503 Coils Coil 203 223 - -
Trre10g04705 503 ProSitePatterns Serine/Threonine protein kinases active-site signature. 305 317 IPR008271 GO:0004672|GO:0006468
Trre10g04705 503 FunFam Putative receptor-like serine/threonine-protein kinase 259 469 - -
Trre10g04705 503 MobiDBLite consensus disorder prediction 462 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04705 Trre-Chr10 55731877 55734444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04705 160 457 Trihelix Transcription Factor Family AT1G70460 49.505 9.17e-93 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Trre10g04705 Pkinase 5.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04705 - - gmx:100798916 807.364