Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04683 ATGGATACTGTGACCAAATTAGATAACTTTGATGACAAGAAAGAAGATGAAGTTGTGCTTCCTGGATTTAGATTCCACCCAACAGATGAAGAGCTTGTTGGATTTTATCTACGGCGAAAAATAGATAAGAAGCCTCTTCGAATGGAACTTATCAAACAGATTGATATCTACAAATATGATCCATGGGATTTACCAACTAGTACTATGGGAGAGAAGGAATGTTATTTCTTTTGTCTAAGAGGAAGAAAATACAGAAACAGCATAAGGCCTAATAGAGTAACAGGATCTGGATTTTGGAAAGCCACAGGAATTGATAAACCTATATACTCATCAAGTGCTAAAGAATCATCACATGAATGCATTGGACTTAAGAAATCATTGGTTTATTATCGTGGAAGTGCTGGAAAAGGTACTAAAACTGATTGGATGATGCATGAATTTCGTCTTCCACCTAAAGGAAAAACTAGCAATAATCAGCTACATAATCAAAGCAATGATGTTCAAGAAGCTGAAGTGTGGACACTATGCAGAATATTCAAACGAATTCCATCATACAAAAAATACACACCAAATTTGAAAAAAGACACAGAAGAAACAGCAGCATTCACAAGTAACTCTTCAAGTTCCAAAACATGCAGCTTAGAATCTGATAACAGCAAACCATACTTGACTTTCACAAACTCACCACTTGTTGATGAAACCAAACCATTTATTAATGGACATGTTGACCAAAGGATTAACCCCTCATTTCTAAGTCATCAGTTAGGCAATAATGTAGTTCAAACTCCATCAAACTTGTCTCAGTCAAGTTTTTGGAATGATCAGAATGCTGTGGATGAAGCATTTACAAATGAGAATTGGGATGATCTTAGATCTGTTATTCAGTTTACCTTTGATCCATCAAAGGTTTATGATTGTAAAGACTTTAATTTGATTTAA 939 0.3482 MDTVTKLDNFDDKKEDEVVLPGFRFHPTDEELVGFYLRRKIDKKPLRMELIKQIDIYKYDPWDLPTSTMGEKECYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDKPIYSSSAKESSHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPKGKTSNNQLHNQSNDVQEAEVWTLCRIFKRIPSYKKYTPNLKKDTEETAAFTSNSSSSKTCSLESDNSKPYLTFTNSPLVDETKPFINGHVDQRINPSFLSHQLGNNVVQTPSNLSQSSFWNDQNAVDEAFTNENWDDLRSVIQFTFDPSKVYDCKDFNLI 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04683 312 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 253 - -
Trre10g04683 312 FunFam NAC domain-containing protein 35 28 184 - -
Trre10g04683 312 SUPERFAMILY NAC domain 17 180 IPR036093 GO:0003677|GO:0006355
Trre10g04683 312 Gene3D NAC domain 28 184 IPR036093 GO:0003677|GO:0006355
Trre10g04683 312 ProSiteProfiles NAC domain profile. 19 181 IPR003441 GO:0003677|GO:0006355
Trre10g04683 312 Pfam No apical meristem (NAM) protein 21 149 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04683 Trre-Chr10 55572964 55576727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04683 13 181 NAC Transcription Factor Family AT5G39820 60.440 3.85e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre10g04683 NAM 9.7e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04683 - - gmx:100784323 436.032