Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04657 ATGGATAATTCAAATGAAGCATCATCATCATTGAGTTTTGTATCATCTCCTCATTTATCAAATGGTTCAAGTAATAATAATCAGAACTTATCTTCCTCAACCAACAATGAACATGTAGCAAATATTGAAATTTTGAGTTTGAATAAGCTAAGTGGAAGCCTTGAGAAGTTATTATTAAGTGATGTTGATTATGATTATTGTGATGCTGAGATTGTTGTTGAAGAAATTTCGGTCGGTATTCATCGATGTATACTCGCTTCGCGGAGTCAGTTTTTTCATGAGCTTTTTAAGAAAGGGAAAGATGGAGAGGTGGAGGAAGGAAAGGGAAAGGGTAAGCCAAGGTATTTCATGAAAGATTTGGTGGCTTATGGTAGTGTTGGATGTGAAGCTTTCATTGTTTTCTTGCATTATTTGTATACTGGAAAGTTAAAGGCTCCACCAACAGAAGTTACAACATGTGTTGATGAAGCTTGTATTCATGATGCGTGTCGTCCTGCTATCGATTATGCTTTGGAACTTATGTATGCTTCTTCCAATTTTAAGATGAAAGAGCTGGTTTTACTTTTTCAGAGGTTTCTCCTAAACTTTGTGGACAAGGCTCTTGTAGAAGATGTCATTCCTATTCTTATGGCTGCACATCACTGCACCCTAGACCAGCTTCTCTCTCCTTGCATTCAGAGAGTAGCAAGGTCTGACATGGATATTATATCTTTGGAAAGAGAACTTCCTCATGAAGTTGTGACCAAAATCAAATCGCTCCGAGTCCAATCTCTTCCAGAATCCTCTCCCGATGCAATGGAAGTGGAACCTGTGAATGTGAATGTGAATGATAAGAGTGTCAGGAAAATCCTTAAAGCATTGGACTCTGATGATGTTGAGTTACTTAAGCTTCTTTTAGATGAATCTAGTGTGACTCTTGACGATGCATGTGCACTACACTATGCCTGTGCACATTGTGATTCTAAGGTTGTTCAAGAAGTTCTTACTCTAGGATTAGCTGATATTCTCCTTAAGAATCCACGCGGATACACGGTTCTTCATGTTGCTGCAAGACGAAAGGATCCATCCATTTTGGTTGCACTGCTGAAGAAAGGTGCCTGTGCATCAGAAACAACTCTTGATGGACAAACTGCTCTTTCGATTTGTCAGAGATTGACGAGACGAAAGGATTATCATGAGAAAACAGTGCAGGGAAAAGAGTCTCACAAGGATAGGCTTTGTGTCGATGTACTTGAAAGAGAGATGAGAAGAAATTCTATGTCGGTAAACATGGAAGTTTTGTCACAGTTAACTGCTGACGACTTGCACATGAGACTGGATTACCTTGAAAATAGAGTTGCATTTGCTAGGTTGTTCTTTCCCGCTGAGGCTAGGGTAGCCATAGAGAATGCTGAGGCAGATTCAACGTCACTGTATGCAACTTCATCACTTTTAAAAGGCAACATAAAAGAAGTAGATCTAAATGAAACTCCTTCTGTTAGAACAAGAAAACTTCAATTAAGATTACAGTCCCTTGTAAAAACAGTTGAGAATGGTAGGCGCTTTTTTCCGCATTGCTCAGAGGTGCTTGATAAGTTTCTGGAGGACGATATGCCGGATGTTTTCGTCCTAGAGAAAGGTACTGAAGAAGAGCAAAGAACAAAGAAAGCGCGGTTCATGGAACTTAAAGATGAGGTGCAGAAAGCCTTTCACAAAGATATGGCGGAAAATAATCATTCAGGTTTTCAATCTTCATTGTCTTCTACATCATCGACGACTCGTAGGGAAAGTCTTAACCATAAAATGAGGAGAAAATGA 1797 0.3929 MDNSNEASSSLSFVSSPHLSNGSSNNNQNLSSSTNNEHVANIEILSLNKLSGSLEKLLLSDVDYDYCDAEIVVEEISVGIHRCILASRSQFFHELFKKGKDGEVEEGKGKGKPRYFMKDLVAYGSVGCEAFIVFLHYLYTGKLKAPPTEVTTCVDEACIHDACRPAIDYALELMYASSNFKMKELVLLFQRFLLNFVDKALVEDVIPILMAAHHCTLDQLLSPCIQRVARSDMDIISLERELPHEVVTKIKSLRVQSLPESSPDAMEVEPVNVNVNDKSVRKILKALDSDDVELLKLLLDESSVTLDDACALHYACAHCDSKVVQEVLTLGLADILLKNPRGYTVLHVAARRKDPSILVALLKKGACASETTLDGQTALSICQRLTRRKDYHEKTVQGKESHKDRLCVDVLEREMRRNSMSVNMEVLSQLTADDLHMRLDYLENRVAFARLFFPAEARVAIENAEADSTSLYATSSLLKGNIKEVDLNETPSVRTRKLQLRLQSLVKTVENGRRFFPHCSEVLDKFLEDDMPDVFVLEKGTEEEQRTKKARFMELKDEVQKAFHKDMAENNHSGFQSSLSSTSSTTRRESLNHKMRRK 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04657 598 ProSiteProfiles Ankyrin repeat region circular profile. 341 366 - -
Trre10g04657 598 Gene3D - 274 415 IPR036770 -
Trre10g04657 598 Gene3D Potassium Channel Kv1.1; Chain A 30 229 IPR011333 -
Trre10g04657 598 ProSiteProfiles BTB domain profile. 67 147 IPR000210 GO:0005515
Trre10g04657 598 FunFam BTB/POZ domain and ankyrin repeat-containing protein NPR1 244 405 - -
Trre10g04657 598 Pfam Ankyrin repeats (3 copies) 289 366 IPR002110 GO:0005515
Trre10g04657 598 SMART BTB_4 67 197 IPR000210 GO:0005515
Trre10g04657 598 MobiDBLite consensus disorder prediction 564 598 - -
Trre10g04657 598 MobiDBLite consensus disorder prediction 570 588 - -
Trre10g04657 598 SUPERFAMILY POZ domain 61 195 IPR011333 -
Trre10g04657 598 Pfam NPR1/NIM1 like defence protein C terminal 383 582 IPR021094 -
Trre10g04657 598 SUPERFAMILY Ankyrin repeat 282 384 IPR036770 -
Trre10g04657 598 MobiDBLite consensus disorder prediction 1 33 - -
Trre10g04657 598 Pfam BTB/POZ domain 65 166 IPR000210 GO:0005515
Trre10g04657 598 Pfam Domain of unknown function (DUF3420) 232 283 IPR024228 -
Trre10g04657 598 ProSiteProfiles Ankyrin repeat profile. 341 366 IPR002110 GO:0005515
Trre10g04657 598 FunFam Regulatory protein NPR3 40 229 - -
Trre10g04657 598 PANTHER REGULATORY PROTEIN NPR3 13 592 IPR044292 GO:0009862|GO:2000022|GO:2000031
Trre10g04657 598 CDD BTB_POZ_NPR_plant 48 197 - -
Trre10g04657 598 SMART ANK_2a 307 337 IPR002110 GO:0005515
Trre10g04657 598 SMART ANK_2a 341 370 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04657 Trre-Chr10 55292743 55295613 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Trre10g04657 NPR1_like_C 7.5e-83 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04657 K14508 - gmx:100816582 826.239