Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04653 ATGGAATTAAATTTCTACCTTAAAAACTCAAAATGGGTATCAACAGTAGCAAGCATATGGATTCAATGCACAAGTGGATCACTCTACACTTTCTCAATCTACTCACAAACACTAAAGTCAACGCAACACTATGATCAGTCAACACTCGACATTGTTTCTGTTTCCAAAGACATTGGAGTCAACGTTGGTGTTCTGTCTGGTCTCTTATATGATTTCCTTGCTACTAGAACTTCAATTGGGCCGTGGATCGTTCATTTTTTGGGCTCGGCCCAATGTTTCTTGGGCTATTTTCTCATTTGGGCTTCTGTCTCCGGTCTCCTTCCGCCGGTGCCGGTGCCGATCATGTGCCTGTTTATGTTCGTGACTGCTCATGGTCAGAGTTTTTTTAACACTTCTAATGTTGTTACTGGTGTTCATAATTTCCCTAATTATAGTGGAACCATCGTTGGCATCTTAAAGGGATTTCTAGGTCTAAGTGGAGCAATATTAATTCAAGTGTATCGAACAATATTCAACAACAACCCTATGTCATATCTGCTGATGCTATCACTCTTGCCACCTATCAACACTTCGATACTTATGTGGTTTGTAAGAATCCACAACACCCATGAGACAGTGTCGGAAGAAAAGAAGTATCTCAACATATTTTCTTTGATGGCTCTAGTTATTGCTGCATATCTTATGATTGTTATAATCCTAGAGAACATCTTCACTCTACAATTGTCGATCCGCATATTTACATTCATTCTGCTTATGGCGTTACTAGCCTCGCTTCTTTGCATTGCATTGAAAGCACATGAAAAGTGTGCTTCTAATAGCGCTGCAGAAAGTTTTCTTGCTGAAGGGTCCAACCTAATTGCAAGAGAAGATTCTTCCAGCAACCAAAGGACTATGCGACAAGGAGAAAATCTGAATCTTTTCGAAGCAGTTAAAACAGTTAACTTTTGGATTTTGTTTGTTTCTATGGCATGCGGAATGGGATCAGGACTCGCAACGGTTAACAATATGAGCCAAATAGGAGAATCTCTTGGTTATTCTACTGTTGAGACAGGTTCGTTGGTTGCTTTGTATAGCATTTGGAATTTTCTTGGCCGTTTTGGCGCTGGTTATGTATCGGATTATTTTTTACACACAAGAGAATGGACAAGACCTATTTTTATGGTGATCACATTGATGATCATGAGCATTGGTCACGTCGTTATTGCTTATGGACTTCCGGGCGCTCTATACGTCGGTTCAATATTGGTCGGTATTTGTTACGGCTCTCAATGGTCTTTAATGCCTACAATCACTTCTGAGATATTTGGTGTAGAACATATGGGAAGCATATTCAACACCATTTCCGTAGCAAGTCCGGTGGGTTCGTATATATTCTCAGTAAGAGTAGTTGGTTATATGTATGATAAAGAAGCATCTGAGGAAGGAAATATATGTGTTGGGACTCATTGTTTCATGTTTCCTTTTCTTATTATGGCATCTGCTACTATTTTTGGTTCTCTAACAGCTTTGTGTTTGTTTTTCCGGACTAGACGCTTTTATGATCAGGTTGTTCTTAGAAGAATTCAAAATGTTCGGTGA 1578 0.3942 MELNFYLKNSKWVSTVASIWIQCTSGSLYTFSIYSQTLKSTQHYDQSTLDIVSVSKDIGVNVGVLSGLLYDFLATRTSIGPWIVHFLGSAQCFLGYFLIWASVSGLLPPVPVPIMCLFMFVTAHGQSFFNTSNVVTGVHNFPNYSGTIVGILKGFLGLSGAILIQVYRTIFNNNPMSYLLMLSLLPPINTSILMWFVRIHNTHETVSEEKKYLNIFSLMALVIAAYLMIVIILENIFTLQLSIRIFTFILLMALLASLLCIALKAHEKCASNSAAESFLAEGSNLIAREDSSSNQRTMRQGENLNLFEAVKTVNFWILFVSMACGMGSGLATVNNMSQIGESLGYSTVETGSLVALYSIWNFLGRFGAGYVSDYFLHTREWTRPIFMVITLMIMSIGHVVIAYGLPGALYVGSILVGICYGSQWSLMPTITSEIFGVEHMGSIFNTISVASPVGSYIFSVRVVGYMYDKEASEEGNICVGTHCFMFPFLIMASATIFGSLTALCLFFRTRRFYDQVVLRRIQNVR 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04653 525 SUPERFAMILY MFS general substrate transporter 216 511 IPR036259 -
Trre10g04653 525 Gene3D MFS general substrate transporter like domains 305 515 IPR036259 -
Trre10g04653 525 Pfam Nodulin-like 11 262 IPR010658 -
Trre10g04653 525 Pfam Major Facilitator Superfamily 318 510 IPR011701 GO:0022857|GO:0055085
Trre10g04653 525 ProSiteProfiles Major facilitator superfamily (MFS) profile. 313 525 IPR020846 GO:0022857
Trre10g04653 525 CDD MFS_Mch1p_like 10 498 - -
Trre10g04653 525 SUPERFAMILY MFS general substrate transporter 14 204 IPR036259 -
Trre10g04653 525 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 12 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04653 Trre-Chr10 55241149 55243886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04653 9 523 Nodulin-like Gene Family AT1G74780 55.056 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04653 - - gmx:100814668 801.971