Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04642 ATGTACATTTGTTGTCCATTTATGTGTCTTTTTGATGCGCCAAACCTGAGAAATATTGGCAATTTGAACGAGTCATTGTCATTGCCATTTTCTGCTTCAAATTGTGGTGATACCATGGCTACCGATTGCCCCCTAAGTTCAAACATGACAACTTCAAGCTGTATGGATGAATCTGGCTTCGTGGAGTCTTCTGAAAATGTGGACCAAGCAAATACACCAACTGGAACCTTTATGAAGGCAGATGCTGAGACAGATGAAGTATATGCTCAGACGACTCTGCAACCAACCAACCAATTACTTTGTAAAACATTTACTCTAAGTGATATCGGCACTCATGGAGGATATTATGTTCTTCAAAGAGCAGCCGAAAAAGTCTTTCCTCCGCTTGTAGGTTATATCGACTTGGTGATTTTGTCTGCTATATTTGATATACACAGTAATTAG 444 0.3964 MYICCPFMCLFDAPNLRNIGNLNESLSLPFSASNCGDTMATDCPLSSNMTTSSCMDESGFVESSENVDQANTPTGTFMKADAETDEVYAQTTLQPTNQLLCKTFTLSDIGTHGGYYVLQRAAEKVFPPLVGYIDLVILSAIFDIHSN 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04642 147 SUPERFAMILY DNA-binding pseudobarrel domain 91 131 IPR015300 -
Trre10g04642 147 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 78 129 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04642 Trre-Chr10 55145414 55146498 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04642 15 79 B3 DNA Binding Superfamily AT1G30330 42.424 6.00e-08 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04642 - - ccaj:109792960 116.701