Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04631 ATGATTACCGCAATTCTCCGAAGAGCTTCTTCAACTCTTTCAAAGCGTGCCATCCCCGCCGCCGAAGCTCTCCTTTCCACCACTGCCGCCACCGGCGAACTCCGACAACTCTCCGTCCTCACAGCAAGATCTTTCCACTCAAAATCACAACCTTTGCTATTTCGTGCCTCTTTGTCTTCTCGTGCTGGTTATGCTGCTGAAGCTTTTCCATACGAAGAACCTTCGAAAGCGAATAGTGATGATGGACTTGAGATAAAAAAGCTTGGAATTTCTCAGGATATCGTTGCTGCTTTGGAAAAGAAAGGAATCACAAAGCTTTTTCCTATTCAGAGGGCAGTGCTGGAACCTGCTATGCAAGGTCGCGATATGATCGGTCGTGCTAGAACAGGAACCGGAAAAACTCTTGCTTTTGGGATACCCATCATGGATAAAATCATTCAGTTTAATGCTAAGCACGGGCGAGGAAAGGATCCTCTGGCCTTGGTGTTGGCTCCGACTAGAGAACTTGCAAAGCAGGTTGAGAAGGAATTCTACGAGGCGGCGCCTAATTTGGATACTATCTGTGTTTATGGGGGTACGCCCATTTCTCAACAGATGAGGCAGCTTGATTATGGTGTTGATATTGCGGTTGGAACGCCTGGACGAATTATTGATCTTCTAAATAGAGGTGCTCTGAATTTGAAGGATGTTCAATTTGTTATTCTCGATGAAGCTGATCAGATGCTTCAAGTAGGGTTTCAGGAGGATGTGGAGAAGATCTTGGAGAGGTTGCCTGCCAAGAGACAAACTCTTATGTTCTCAGCAACAATGCCAACTTGGATAAAGCAGTTAACACGAAATTACCTAAAAGATCCCCTAACCATTGATCTTGTTGGAGATTCCGATCAGAAGCTAGCAGATGGAATTTCACTGTATTCAGTTGCATCTGATGCGTATGTCAAAGCAGGAATTCTTGTTCCTCTGATAAAAGAACATGCAAATGGAGGAAAATGTATTGTTTTCACTCAAACAAAACGTGATGCTGATCGAATATCACACGGAATGTCAAAAAGTATTCCATGTGAGGCCTTGCATGGAGATATATCACAAGCTCAGAGGGAAAGAACTCTTGCTGGATTCAGGGAAGGCCATTTTAATGTTTTAGTGGCAACTGATGTTGCTTCACGTGGGCTCGATATACCTAATGTTGATCTTGTAATTCATTATGAGCTTCCCAATAATTCAGAGATATTTGTTCATCGATCTGGAAGAACAGGTCGTGCTGGTAAGAAAGGAACAGCTATTTTAATTTATACAGATGGTCAATCCAGGACTCTTAGGACTATTGAGCGCGATGTAGGCTGCAGATTTAATGAGTTACCAAAGATTGCCGTTGATAGTGCATCAGTGGGTGCATTTGGTAGCATGGGTGGTGGGCGATTTGGTGGCGGTGGTGGTGGTGGATTTGGTGGTTCAAGGGGTGGATTTGGTGATTCAGGCTTCAGCCGTGGTCCTGGGTCTTATGGAGGTTCAAGGGGTGGGTTTGGTGATTCAAGCTTTAACCGTGGTCCTTCATCTAACCGTTCTGGGGGTTACGGTAATTCAGGTGAAAGGTTTGGCAACTCATCTGGTGAAAATAGATATGGCGGATCAAGCTCTGGTCGTTTCGGTTCCTTTGGTTCAGGTTCTTCAGGAAGTAGATCTGGAGGATCGCCTAGTGGATTTAAATTTAGCGGACAAGGTGGTTCAGACCGTGCAGGTAGTTTTGGGGATTTTGTGTCTGGTAAAACCAGCGGATTTGGTGGATTTGGTGATCGCCGTGGCAGGGATTAG 1812 0.4503 MITAILRRASSTLSKRAIPAAEALLSTTAATGELRQLSVLTARSFHSKSQPLLFRASLSSRAGYAAEAFPYEEPSKANSDDGLEIKKLGISQDIVAALEKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIQFNAKHGRGKDPLALVLAPTRELAKQVEKEFYEAAPNLDTICVYGGTPISQQMRQLDYGVDIAVGTPGRIIDLLNRGALNLKDVQFVILDEADQMLQVGFQEDVEKILERLPAKRQTLMFSATMPTWIKQLTRNYLKDPLTIDLVGDSDQKLADGISLYSVASDAYVKAGILVPLIKEHANGGKCIVFTQTKRDADRISHGMSKSIPCEALHGDISQAQRERTLAGFREGHFNVLVATDVASRGLDIPNVDLVIHYELPNNSEIFVHRSGRTGRAGKKGTAILIYTDGQSRTLRTIERDVGCRFNELPKIAVDSASVGAFGSMGGGRFGGGGGGGFGGSRGGFGDSGFSRGPGSYGGSRGGFGDSSFNRGPSSNRSGGYGNSGERFGNSSGENRYGGSSSGRFGSFGSGSSGSRSGGSPSGFKFSGQGGSDRAGSFGDFVSGKTSGFGGFGDRRGRD 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04631 603 MobiDBLite consensus disorder prediction 511 571 - -
Trre10g04631 603 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 83 111 IPR014014 GO:0003724
Trre10g04631 603 CDD SF2_C_DEAD 314 431 - -
Trre10g04631 603 Gene3D - 84 292 IPR027417 -
Trre10g04631 603 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 443 IPR027417 -
Trre10g04631 603 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 73 464 - -
Trre10g04631 603 Pfam Helicase conserved C-terminal domain 316 422 IPR001650 -
Trre10g04631 603 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 317 461 IPR001650 -
Trre10g04631 603 SMART helicmild6 342 422 IPR001650 -
Trre10g04631 603 Gene3D - 311 462 IPR027417 -
Trre10g04631 603 MobiDBLite consensus disorder prediction 489 603 - -
Trre10g04631 603 FunFam ATP-dependent RNA helicase RhlE 75 291 - -
Trre10g04631 603 SMART ultradead3 102 305 IPR014001 -
Trre10g04631 603 CDD DEADc 94 289 - -
Trre10g04631 603 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 114 288 IPR014001 -
Trre10g04631 603 Pfam DEAD/DEAH box helicase 107 276 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04631 Trre-Chr10 55092308 55096289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04631 81 459 Eukaryotic Initiation Factors Gene Family AT3G19760 32.642 8.90e-68 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04631 - - tpra:123920937 917.916