Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04630 ATGGATTCTCCTACTTTCACTTTTGTTCTCTATACCCTCTTTCTTTTGTGTCTCAACACTACTCTCTCTTCTTCTTCTTCATCATCATCATCATCATCATCACTTCCTATGTCTTTGAAAACACAAGCTTATATCTTAGTTTCTCTCAAACAAAATTTTGAACCAAACACTTCCTTAAAAACATGGAATATCTCTAACTACATGTCCCTTTGTTCTTGGTATGGTATTCAATGTGACACAAACAATACTTCTATTGTGTCACTAGACATATCAAACTTGAACATCTCAGCTACTTTTTCACCTTCCATCACAAAACTATCCAACTTAAGATTCCTCAACATATCAAACAACTTATTCAGTGGAAATCTAAGTTGGAATTTCTCTCATTTCAAAGATCTTGAAGTTTTTGATGCTTACAACAATGAGTTCAATTGTTCACTACCTATTGATATCACTAAGTTACCTAAGCTCAAATACTTGAATCTTGGAGGAAATTTTTTCAATGGAGAAATTCCTCCAAATTATGGAAGCATGATTCAGCTTAACTATTTGTCTCTTGCAGGTAATGATTTGAGAGGTTTCATACCTTATGAACTTGGAAATCTTACTAATCTCACACACCTTTTGTTAGGATATTACAACGTGTTTGATGGTGGAATTCCATCTCATTTTGGTAATCTTGTTAATTTAGTTCATCTTGATCTTGCAAATTGTGGTTTGAAAGGTTCAATTCCTAATGAATTAGGAAAACTTTACAAACTAGACACACTTTTCTTGCAAACCAATCAACTTAGTGGTTCAATTCCTTCACAATTAGGTAACTTGAGTAGTTTGAAATCTCTTGATATGTCAAACAATGAGTTAATTGGAAACATTCCTAATGAGTTTTCAAATCTTCATGAACTCACACTCTTGAACTTGTTCATCAATAAGTTATATGGTGAAATTCCATCTTTTGTTTCTGAGTTACCAAATTTAGAAGTGTTGAAGCTTTGGCATAATAACTTTACAGGTTCTATTCCTTCAAAGTTAGGACAAAATGGTAAATTGAGTGAGCTTGATTTATCAACAAATAAACTCACTGGATTAGTACCTAAATCTTTATGCATTGGAAAAAAGCTTAAGATTTTAATCTTGCTTAACAATTTTCTGTTTGGTTCTTTGCCTAATGAACTTGGTGAATGTTACACACTTCAACGAGTTCGTTTAGGACAAAACTATTTAACCGGTTCGATACCAAAAGGTTTTCTTTATTTGCCTCAACTTTCACTTCTTGAACTTCAAAACAATTATCTTAGTGGTTTTCTTCCACCACAAGAAATCACAAACACAAACAGTTCTAAACTCGGAGAGATGAATCTTTCGAACAATCGTTTATCTGGTTCTCTACCTAGTTCTATTGGAAACTTTCCAAATTTGCAGATTCTGCTTCTTCATGGAAATAGATTCTCAGGTGAAATTCCTCAAGATATAGGAAAGTTGAAGAACAGTCTTAGACTAGATATGAGTTTCAACAACTTTTCAGGAGAAATTCCTATTGAGCTAGGTGAATGTTCTTTGCTTACCTATTTAGATTTGAGTCAAAATCAATTATCAGGTCCTATTCCAATTCAGCTTTCTCAAATTCACATACTTAACTATCTTAATGTCTCATGGAACAACCTAAACCAAACACTTCCTAAGGAACTTGGTGCTATAAAAGGCTTAACTTCAGCTGATTTCTCTCATAATGACTTATCTGGCTCAATTCCTGAAATAGGCCAATTCTCAATGTTCAATTCTACTTCCTATATCGGTAATCCGAAGTTATGTGGATATGATTTGAATCCATGCAACCGTTCTTCGTCAACAATGTTCGAGTCTCAAGATCAAAACAACGGTCATGCGAAACCTGGAGTTCTGGTAAAGTACAAGCTTCTATTTGCATTAGCACTTTTGTTTTGTTCATTGGTTTTCGCAACATTAGCTATAATCAAAAGCCGAAAAGGAATTGGGAGAGACTCAAATTCGTGGAAGTTAACAGCATTTCAGAAGATTGAATATGGAAGTGAAGATATCTTAGGTTGTATAAAGGAAAGTAACATCATAGGAAGAGGAGGTGCTGGTGTTGTATATGGGGGTACAATGCCAAATGGAGAAAAAATAGCTGTGAAAAAGTTATTAGGAATTAACAAAGGTTGTTCTTATGATAATGGTTTATCAGCTGAAATAAAAACACTTGGTAGAATAAGGCATAGGTACATTGTGAAGTTATTAGCATTTTGTTCAAATAGAGATACAAATTTGCTTGTTTATGAGTATATGACAAAGGGTAGTTTAGGTGAAGTGTTGCATGGTAAAAGAGGGGGGTATCTTGAGTGGGATGTAAGGGTGAAAATAGCAATTGAAGCTGCTAAAGGACTATGTTATTTGCATCATGATTGTTGTCCTATGATTGTTCATAGAGATGTTAAGTCAAATAATATTTTGTTGGATTCTGAGTTTGAAGCTCATGTTGCTGATTTTGGACTTGCTAAGTTCTTGTTGCAAGAGAATAATGGTGGGACTTCTGAATACATGTCTTCTATTGTTGGTTCTTATGGCTACATTGCTCCAGAATATGCATACACATTGAAAGTGGATGAGAAAAGTGATGTATATAGTTTTGGAGTGGTATTACTAGAACTACTAACAGGTAGAAGGCCAGTGGGAGATTTTGGTGAAGAAGGAATGGATATTGTTCAATGGACAAAGTTACAAACTGATTTGAACAAAGAAAAAGTTGTGAAGATTCTTGATAAGAGATTACATCACAATATTCCTTTAGATGAAGCAATGCAGTTATTCTTTGTGGCTATGTTATGTGTTCAAGAACAAAGTGTGGAAAGACCAACTATGAGAGAAGTTGTTGAGATGCTAGTACAAGCAAAGCAACCAAATATATTTCAAATGTAG 2934 0.3405 MDSPTFTFVLYTLFLLCLNTTLSSSSSSSSSSSSLPMSLKTQAYILVSLKQNFEPNTSLKTWNISNYMSLCSWYGIQCDTNNTSIVSLDISNLNISATFSPSITKLSNLRFLNISNNLFSGNLSWNFSHFKDLEVFDAYNNEFNCSLPIDITKLPKLKYLNLGGNFFNGEIPPNYGSMIQLNYLSLAGNDLRGFIPYELGNLTNLTHLLLGYYNVFDGGIPSHFGNLVNLVHLDLANCGLKGSIPNELGKLYKLDTLFLQTNQLSGSIPSQLGNLSSLKSLDMSNNELIGNIPNEFSNLHELTLLNLFINKLYGEIPSFVSELPNLEVLKLWHNNFTGSIPSKLGQNGKLSELDLSTNKLTGLVPKSLCIGKKLKILILLNNFLFGSLPNELGECYTLQRVRLGQNYLTGSIPKGFLYLPQLSLLELQNNYLSGFLPPQEITNTNSSKLGEMNLSNNRLSGSLPSSIGNFPNLQILLLHGNRFSGEIPQDIGKLKNSLRLDMSFNNFSGEIPIELGECSLLTYLDLSQNQLSGPIPIQLSQIHILNYLNVSWNNLNQTLPKELGAIKGLTSADFSHNDLSGSIPEIGQFSMFNSTSYIGNPKLCGYDLNPCNRSSSTMFESQDQNNGHAKPGVLVKYKLLFALALLFCSLVFATLAIIKSRKGIGRDSNSWKLTAFQKIEYGSEDILGCIKESNIIGRGGAGVVYGGTMPNGEKIAVKKLLGINKGCSYDNGLSAEIKTLGRIRHRYIVKLLAFCSNRDTNLLVYEYMTKGSLGEVLHGKRGGYLEWDVRVKIAIEAAKGLCYLHHDCCPMIVHRDVKSNNILLDSEFEAHVADFGLAKFLLQENNGGTSEYMSSIVGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELLTGRRPVGDFGEEGMDIVQWTKLQTDLNKEKVVKILDKRLHHNIPLDEAMQLFFVAMLCVQEQSVERPTMREVVEMLVQAKQPNIFQM 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04630 977 SUPERFAMILY L domain-like 291 613 - -
Trre10g04630 977 SMART LRR_typ_2 227 251 IPR003591 -
Trre10g04630 977 SMART LRR_typ_2 154 178 IPR003591 -
Trre10g04630 977 SMART LRR_typ_2 470 494 IPR003591 -
Trre10g04630 977 SMART LRR_typ_2 275 298 IPR003591 -
Trre10g04630 977 SMART LRR_typ_2 323 347 IPR003591 -
Trre10g04630 977 SMART LRR_typ_2 419 443 IPR003591 -
Trre10g04630 977 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 327 615 - -
Trre10g04630 977 Pfam Protein kinase domain 692 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04630 977 Gene3D Ribonuclease Inhibitor 40 195 IPR032675 -
Trre10g04630 977 Gene3D Ribonuclease Inhibitor 349 615 IPR032675 -
Trre10g04630 977 Gene3D Ribonuclease Inhibitor 196 274 IPR032675 -
Trre10g04630 977 Gene3D Ribonuclease Inhibitor 275 348 IPR032675 -
Trre10g04630 977 SUPERFAMILY L domain-like 50 365 - -
Trre10g04630 977 SUPERFAMILY Protein kinase-like (PK-like) 687 967 IPR011009 -
Trre10g04630 977 Gene3D Transferase(Phosphotransferase) domain 1 768 975 - -
Trre10g04630 977 Gene3D Phosphorylase Kinase; domain 1 685 767 - -
Trre10g04630 977 ProSitePatterns Serine/Threonine protein kinases active-site signature. 812 824 IPR008271 GO:0004672|GO:0006468
Trre10g04630 977 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 127 214 - -
Trre10g04630 977 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 768 977 - -
Trre10g04630 977 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 215 320 - -
Trre10g04630 977 Pfam Leucine rich repeat N-terminal domain 40 79 IPR013210 -
Trre10g04630 977 ProSiteProfiles Protein kinase domain profile. 690 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04630 977 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 224 967 - -
Trre10g04630 977 Pfam Leucine Rich Repeat 277 299 IPR001611 GO:0005515
Trre10g04630 977 Pfam Leucine Rich Repeat 229 251 IPR001611 GO:0005515
Trre10g04630 977 SMART serkin_6 690 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04630 977 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 659 767 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04630 Trre-Chr10 55078952 55083324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04630 28 968 Receptor kinase-like Gene Family AT5G65700 55.247 0.0 1046
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre10g04630 Pkinase 3.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04630 - - gmx:100816158 1431.39