Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04628 ATGGCTTTCTTTAGGAACTTCGTAAATGATACAGTCTCACATGGTGTCATGGAAGATAAAAGCCTAGGACAGGATGCTAATAATACCAATAGATCAGTAGGTAATGAATGTACTGATGCAACTTCTAGCGAGAAAGAATTCGATATGAACTTGGAGGCACAATATGAGAGTGATGGTGGACCAGATGCTGCCTGTAGACTGCAAAATGAGGGAACGGCTGATGATGGAGATGCTATGAGAGAATCCAACTTACAGGCTGCTGGTAGTAAAGCATCTACAGTTGGACGGTGGGGCTCAACATTTTGGAAGGACTGCCAACCACTGTGTCCTCAAAATGGTTCCGAATCTGGGAAGGAATCAAAAAGTGGATCAGACTATAGAAATCCAGGGGGATCCGAAGATAATTCATTGGATGGAGAAACAGGAAGGCTAGACTCAGAAGATGATGATGGACAAAAGGAGCCAGGTAAAGGCCGAAGAAGCCACTCTGATGTTCCTGCCGAAGAGATGTTGTCTGATGAATATTATGAGCAGGATGGGGAAGATCAAAGTGACTCATTGCATTATAATGGGATTCACAAGCCTACTGGACGGAATTCATGGCCTCAACAAATGTCTAATTCTACGAAAAGAACCGTGCGTAGGAAATCTAGGATTTCAGATGACGATGGTGATGGTGATTATGAAGAAGAAGATGAAGTAGATGAAGATGATCCTGATGATGCAGATTTTGAGCCTGCCGCAAGTAGCCATACCTTAACCAAGGATAAAGATTGGGAAGGTGTAGGATCGGATGAAAATGATGACAGTGATGAAAGTCTAGATATCTCTGATGATGACGAATCTTTCTATAATAAAAAACCCAAGGGAAGGCAACAAGGTAAGGTTAGAAAAAGTATAAAATCTACCAGAGATCGCAAAGCAGGTGTTGCATCTAGCAGACAAAGAAGATTCAAACCATCTTTTGAAGATAATGAGTCAACAACAGATGATTCTGCCAGTGATAGTGATGACGATTTCAAAAGCACAAGAAAGAGAAGTTTCAATGTCCGCAAGAATAACAGCCGGTTTTCTGCAACCAACAGTTTTTCTACCCACAGCAGTGAGGTCCGCACTTCTACTAGGTCGGTTAGGAAGATATCGTACGTTGAAAGTGATGAAAGTGAAGAGGCTGATGAAGGGAAGAAGAAAAAGTCTCAAAAGGAGGAAATTGAAGAGGACGATGGTGACTCTATTGAAAAGGTGCTTTGGCATCAGCTGAAGGGCACAGCTGAAGATGCCCAAAGGAATAATAGATCAACAGAGCCTGCTTTAACGAGTCACTTGTTTGATTCTGAATTTGATTGGAATGAGATTGAATTTTTGATAAAATGGAAGGGGCAATCTCATTTGCACTGTCAATGGAAGTCTTTTGCAGAGCTACAAAATCTCAGTGGCTTTAAGAAGGTTTTGAATTATACAAAGAAAATAATGGAGGACATCAGGTACCGGAAGACAATCTCAAGGGAGGAGATTGAGGTCCATGATGTGAGTAAGGAGATGGATTTAGAAATTATCAGGCAGAATAGTCAGGTGGAAAGAATAATTGCAGACAGGATCAGTAAAGATGATTCTGGTGATGTTATACCAGAATACCTGGTGAAGTGGCAAGGACTATCTTATGCTGAAGTGACTTGGGAAAAGGACATTGATATCGCTTTTGCTCAACATTCAATTGACGAATATAAGGCTCGAGAGGCTGCAATGTCAGTTCAAGGAAAGGTGGTGGATTCCCAGCGTAAGAAGAGCAAAGCAAGTTTGCGGAAGCTTGAGGAACAACCTGAATGGTTGAAGGGTGGAAAGCTCCGTGATTATCAACTTGAGGGTTTGAATTTTCTTGTTAACAGCTGGAGAAATGATACAAATGTCATTTTAGCGGATGAAATGGGTCTTGGGAAAACTGTTCAGTCAGTATCAATGCTTGGTTTTCTACAGAATGCCCAGCAAATCCATGGTCCTTTTCTTGTAGTTGTGCCGTTGTCTACTTTATCAAACTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATTATTGTATACGTTGGTACTCGAGCAAGTCGAGAGGTTTGTCAACAGTATGAATTTTATAATGATAAAAAGCCTGGTAAACCAATAAAATTCAATGCACTGTTGACTACATATGAAGTAATTTTGAAAGATAAGGCAGTTCTCTCCAAGATCAAATGGAATTATCTGATGGTAGATGAAGCTCATAGACTAAAAAATAGTGAGGCGCAGTTGTATACATCACTTTTAGAATTTAGCACCAAGAATAAGTTGCTCATCACTGGGACTCCTTTACAAAATAGTGTTGAAGAGCTATGGGCTTTGCTCCACTTCCTTGATCCTAACAAGTTCAACAGCAAGGATGATTTTGTTCAAAACTATAAAAATCTGAGTTCTTTCCATGAGAATGAGCTTGCAAATCTTCATATGGAATTGAGGCCACACATACTTCGAAGAGTTATCAAAGATGTGGAGAAATCTTTACCTCCAAAAATTGAGCGTATCCTTAGGGTTGAAATGTCTCCTCTTCAGAAACAGTATTATAAGTGGATTTTGGAACGTAACTTTCAAAATTTAAACAAAGGAGTTCGCGGCAATCAGGTTTCTCTTCTAAATATTGTGGTGGAATTGAAAAAATGTTGCAACCATCCCTTCCTATTTGAAAGTGCTGACCATGGCTATGGTGGGGACTCTGGAGGCAGTGACAACAGTAAACTTGAGAGAATTGTCTTTAGCAGTGGCAAGCTTGTGATACTTGATAAGCTTCTTGTTAGATTGCATGAGACCAAGCATCGTGTTCTGATTTTCTCTCAGATGGTCAGGATGTTGGATATATTGGCACAGTATTTGTCACTTCGAGGGTTTCAATTTCAAAGACTTGATGGCAGTACAAAATCTGAGCTGCGACAGCAGGCAATGGAGCATTTCAATGCACCTGGTAGTGATGATTTTTGCTTCCTTCTTTCAACACGAGCAGGAGGTCTAGGTATCAACCTTGCCACAGCAGACACAGTCATTATATTTGATTCTGACTGGAATCCTCAAAATGACCTCCAGGCAATGAGTAGAGCTCATAGAATTGGGCAACAAGAAGTTGTTAACATATATAGATTTGTGACAAGCAAAAGTGTCGAAGAAGATATTCTGGAGCGTGCTAAGAAGAAGATGGTTCTGGACCACTTGGTGATTCAAAAACTGAATGCAGAAGGTAGACTGGAGAAGAAAGAAGCCAAAAAAGGAGGAAGTCTTTTTGATAAAAATGAACTGTCAGCAATCTTACGATTTGGAGCTGAAGAGCTTTTCAAGGAAGAAAGAAATGATGAAGAAAGCAAGAAAAGACTCTTAAGTATGAATATAGATGAGATTCTTGAAAGAGCTGAGAAAGTTGAAGAGAAGATAGATGAAGAAGAACAAGGCAATGAGTTATTAAGTGCATTTAAGGTTGCCAATTTTTGCAATGATGAAGATGATGCAAGTTTCTGGAGTCGTTGGATAAAGCCTGATGCTGCATTCCAAGCAGAGGAAGCTCTTGCTCCACGTTCTGCAAGAAATATTAAAAGCTACGCAGAGGCTGATCCATCTGAAAGGAGTAATAAAAGAAAAAAGAAGGAACCTGAACAACCTGAACGAGTTCAGAAACGCCGCAAAGCAGAGCATTCAGCTCCTGCAGTACCAATGGTTGATGGAGCCTCTGTCCAAGTGAGAAGTTGGTCATATGGGAATTTGTCTAAAAGAGATGCACTCCGTTTTTCTCGTGCAGTTATGAAATTCGGCAATGAAAACCAAATCGACTTAATTGCTGCCGACGTTGGTGGTGCAGTTGTGGCAGCTCCACCTGAAGCGCAGATTGAACTTTTCAATGCTCTAATTGATGGTTGTTCAGAAGCTGCGGAAATCGAAAATTTGGATATAAAGGGGCCTGTGCTAGACTTTTTTGGTGTCCCAGTGAAAGCAAATGATCTACTTACCCGTGTCCAAGAACTTCAGCTCCTAGCAAAGCGCATTAGCCGGTATGAAGATCCCATTGCACAATTCCGTGTTTTATCATATCTCAAACCTTCAAATTGGTCGAAAGGTTGTGGGTGGAATCAAATTGATGATGCCAGATTGCTTCTTGGAATACATTACCATGGATTTGGTAATTGGGAAATGATTAGATTAGATGAAAGGCTTGGCCTCATGAAAAAAATAGCACCTGTAGAACTCCAAAACCATGAAACTTTCTTGCCACGAGCTCCAAATTTGAGAGACCGTGCTAATGCCCTTCTGGAGCAAGAACTCGTTGTTCTTGGGGTAAAAAATGTGAATAGCAGAGTTGCACGGAAGCCTTCCAAGAAAGAGAAAGAACATATGAATATCTCACTATTGCGTGGACAGGAGAAGAAGAAAAAACCGGGTTCTGTTAATGTCCAAATGAGGAAGGATAGGTTTCAGAAACCCCAAAAGGTTGAACCTATTGTAAAAGAGGAAGGTGAAATGTCCGACAATGAAGAAGTATATGAGCAGTTTAAGGAAGTAAAATGGATGGAATGGTGTCAAGATGTGATGGTTGAAGAAATGAAAACTTTGAAACGTCTTCACAGATTGCAGACAACTAGTGCTAATCTTCCTAAGGAAAAGGTTCTTTCAAAGATACGCAACTATTTACAACTTCTTGGGCGAAGGATTGATCAAATTGTGTTTGAAAATGAAGTGGAACCCTATAAGCAAGATAGAATGACTGTACGATTGTGGAAATATGTATCCACCTTTTCCCATCTTTCAGGGGAGAGGCTTCATCAAATATATTCCAAACTTAAACAGGAACAAAATGATGAGGCCGGGGTTGGTCCCTCTGCTTCATTTAACAGAAATGGAAACCCATTCCATCGCCATATGGAGAGGCAAAGAGGATTAAAAAATATGGTTAACTATCAAATGTCAGAACCTGATAATAATAACACAGGAAAATCTGAGGCATGGAAACGGAGAAGAAGATCTGAAAGTGATGATCATTTCCTGGGTCAGCCACCACCACCTCAAAGAATCACCAGTAATGGAGTCCGGATTACTGACCCTAACTCACTTGGGATCCTTGGTGCTGGGCCATCTGACAAACGGTTTGTTAGTGAAAAACCTTTTAGGACACAACCTGGTGGTGTTCCTTAA 5199 0.4058 MAFFRNFVNDTVSHGVMEDKSLGQDANNTNRSVGNECTDATSSEKEFDMNLEAQYESDGGPDAACRLQNEGTADDGDAMRESNLQAAGSKASTVGRWGSTFWKDCQPLCPQNGSESGKESKSGSDYRNPGGSEDNSLDGETGRLDSEDDDGQKEPGKGRRSHSDVPAEEMLSDEYYEQDGEDQSDSLHYNGIHKPTGRNSWPQQMSNSTKRTVRRKSRISDDDGDGDYEEEDEVDEDDPDDADFEPAASSHTLTKDKDWEGVGSDENDDSDESLDISDDDESFYNKKPKGRQQGKVRKSIKSTRDRKAGVASSRQRRFKPSFEDNESTTDDSASDSDDDFKSTRKRSFNVRKNNSRFSATNSFSTHSSEVRTSTRSVRKISYVESDESEEADEGKKKKSQKEEIEEDDGDSIEKVLWHQLKGTAEDAQRNNRSTEPALTSHLFDSEFDWNEIEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYTKKIMEDIRYRKTISREEIEVHDVSKEMDLEIIRQNSQVERIIADRISKDDSGDVIPEYLVKWQGLSYAEVTWEKDIDIAFAQHSIDEYKAREAAMSVQGKVVDSQRKKSKASLRKLEEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIVYVGTRASREVCQQYEFYNDKKPGKPIKFNALLTTYEVILKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTSLLEFSTKNKLLITGTPLQNSVEELWALLHFLDPNKFNSKDDFVQNYKNLSSFHENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFQNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGGSDNSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAQYLSLRGFQFQRLDGSTKSELRQQAMEHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGSLFDKNELSAILRFGAEELFKEERNDEESKKRLLSMNIDEILERAEKVEEKIDEEEQGNELLSAFKVANFCNDEDDASFWSRWIKPDAAFQAEEALAPRSARNIKSYAEADPSERSNKRKKKEPEQPERVQKRRKAEHSAPAVPMVDGASVQVRSWSYGNLSKRDALRFSRAVMKFGNENQIDLIAADVGGAVVAAPPEAQIELFNALIDGCSEAAEIENLDIKGPVLDFFGVPVKANDLLTRVQELQLLAKRISRYEDPIAQFRVLSYLKPSNWSKGCGWNQIDDARLLLGIHYHGFGNWEMIRLDERLGLMKKIAPVELQNHETFLPRAPNLRDRANALLEQELVVLGVKNVNSRVARKPSKKEKEHMNISLLRGQEKKKKPGSVNVQMRKDRFQKPQKVEPIVKEEGEMSDNEEVYEQFKEVKWMEWCQDVMVEEMKTLKRLHRLQTTSANLPKEKVLSKIRNYLQLLGRRIDQIVFENEVEPYKQDRMTVRLWKYVSTFSHLSGERLHQIYSKLKQEQNDEAGVGPSASFNRNGNPFHRHMERQRGLKNMVNYQMSEPDNNNTGKSEAWKRRRRSESDDHFLGQPPPPQRITSNGVRITDPNSLGILGAGPSDKRFVSEKPFRTQPGGVP 1732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04628 1732 CDD SF2_C_SNF 921 1056 - -
Trre10g04628 1732 MobiDBLite consensus disorder prediction 105 409 - -
Trre10g04628 1732 Gene3D - 525 577 - -
Trre10g04628 1732 MobiDBLite consensus disorder prediction 1654 1732 - -
Trre10g04628 1732 Coils Coil 1075 1095 - -
Trre10g04628 1732 MobiDBLite consensus disorder prediction 1666 1682 - -
Trre10g04628 1732 MobiDBLite consensus disorder prediction 138 169 - -
Trre10g04628 1732 CDD CD2_tandem 521 577 - -
Trre10g04628 1732 Gene3D - 606 845 IPR038718 -
Trre10g04628 1732 MobiDBLite consensus disorder prediction 22 40 - -
Trre10g04628 1732 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 935 1086 IPR001650 -
Trre10g04628 1732 SUPERFAMILY Chromo domain-like 502 578 IPR016197 -
Trre10g04628 1732 MobiDBLite consensus disorder prediction 224 243 - -
Trre10g04628 1732 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 839 1120 IPR027417 -
Trre10g04628 1732 SMART chromo_7 521 580 IPR000953 -
Trre10g04628 1732 SMART chromo_7 408 491 IPR000953 -
Trre10g04628 1732 SMART ultradead3 611 810 IPR014001 -
Trre10g04628 1732 Pfam Domain of unknown function (DUF4208) 1523 1615 IPR025260 -
Trre10g04628 1732 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 627 799 IPR014001 -
Trre10g04628 1732 Gene3D - 396 522 - -
Trre10g04628 1732 SMART DUF4208_2 1511 1616 IPR025260 -
Trre10g04628 1732 MobiDBLite consensus disorder prediction 20 41 - -
Trre10g04628 1732 SMART helicmild6 961 1045 IPR001650 -
Trre10g04628 1732 Pfam SNF2-related domain 634 903 IPR000330 GO:0005524|GO:0140658
Trre10g04628 1732 MobiDBLite consensus disorder prediction 352 379 - -
Trre10g04628 1732 MobiDBLite consensus disorder prediction 1620 1640 - -
Trre10g04628 1732 SUPERFAMILY Chromo domain-like 407 490 IPR016197 -
Trre10g04628 1732 MobiDBLite consensus disorder prediction 380 409 - -
Trre10g04628 1732 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 603 836 IPR027417 -
Trre10g04628 1732 Gene3D - 846 1076 IPR027417 -
Trre10g04628 1732 MobiDBLite consensus disorder prediction 1206 1238 - -
Trre10g04628 1732 FunFam Chromodomain-helicase-DNA-binding protein 2 isoform 1 846 1076 - -
Trre10g04628 1732 ProSiteProfiles Chromo and chromo shadow domain profile. 410 498 IPR000953 -
Trre10g04628 1732 CDD CD1_tandem 408 488 - -
Trre10g04628 1732 MobiDBLite consensus disorder prediction 263 278 - -
Trre10g04628 1732 FunFam Photoperiod-independent early flowering 1 585 859 - -
Trre10g04628 1732 Coils Coil 1129 1156 - -
Trre10g04628 1732 ProSiteProfiles Chromo and chromo shadow domain profile. 523 587 IPR000953 -
Trre10g04628 1732 MobiDBLite consensus disorder prediction 303 326 - -
Trre10g04628 1732 Gene3D - 1342 1446 - -
Trre10g04628 1732 Pfam Helicase conserved C-terminal domain 932 1045 IPR001650 -
Trre10g04628 1732 MobiDBLite consensus disorder prediction 1199 1241 - -
Trre10g04628 1732 MobiDBLite consensus disorder prediction 196 210 - -
Trre10g04628 1732 MobiDBLite consensus disorder prediction 105 135 - -
Trre10g04628 1732 Pfam Chromo (CHRromatin Organisation MOdifier) domain 524 578 IPR023780 -
Trre10g04628 1732 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 183 1655 - -
Trre10g04628 1732 MobiDBLite consensus disorder prediction 55 93 - -
Trre10g04628 1732 FunFam protein CHROMATIN REMODELING 5 isoform X2 525 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04628 Trre-Chr10 55047255 55067587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04628 637 1072 RAD5 or RAD16-like Gene Family AT1G02670 26.337 6.21e-37 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre10g04628 SNF2_N 3e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04628 K11367 - gmx:100792398 2930.2