Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04621 ATGGAAGGGTTCGGAATGAATTCGGATCTTAGCAGAACTGGTGCTGCAGAAAGAGACATTGAGCAGGCCATTACTGCTTTGAAAAAAGGGGCTTGCTTGCTCAAATATGGAAGAAGGGGAAAGCCCAAGTTTTGCCCCTTTCGGCTTTCCAATGATGAATCTGTTTTGGTATGGTTCTCGGGGAAAGAAGAGAAGCACCTCAAACTGAGTCATGTCTCTAGAATTATATCTGGACAACGCACGCCTATCTTTCAAAGATATCCACGACCTGAGAAGGAATACCAGTCGTTTTCTCTTATCTACAATGATAGATCACTGGACTTGATATGTAAGGATAAAGATGAAGCTGAGGTTTGGTTCAGCGGTTTGAAAGCATTAATTTCACGTAGCCATCACCGGAAGTGGAGAACAGAGTCAAGAAGTGATGGTATTCCATCTGAAGTTAATAGTCCTCGAACATACACAAGAAGAAGTTCCCCCTTGCATTCTCCATTTGGTTGTAATGAGAGCTTGCAAAAGGATAGTGGGGATCACCTTCGCCTTCATAGTCCATATGAGAGCCCCCCTAAAAATGGTTTGGATAAAGCATTAGATGTGGTCCTGTATGCCGTTCCTCAAAAAAGTTTCTTCCCTCTGGATTCTGCCAGTGCTTCTGTCCACTCTATATCATCCGGAGGATCAGATAGTATGCATGGTCACATGAAGACAATGGGTATGGATGCTTTTAGAGTTAGTCTATCAAGTGCTGTCAGCTCATCCAGCCAAGGGTCTGGTCATGATGACGGTGATGCTTTAGGGGATGTTTTCATTTGGGGGGAAGGCACAGGTGATGGTGTTATTGGTGGTGGTAATCATAGAGTTGGGAGTGGTTTGGGTGTAAAAATTGATTCTCTATTTCCCAAAGCATTAGAATCTGCGGTAGTTCTCGATGTGCAGAATATTGCTTGTGGTGGACGACATGCGGCCTTAGTGACCAAACAAGGTGAAATTTTCTCCTGGGGAGAGGAATCAGGAGGCAGGCTCGGGCATGGTGTAGAGTCTGATGTTCTCCATCCAAAGCTTATAGATGCTCTAAGTAATACAAATATTGAACTAGTAGCTTGTGGGGAGTATCATACATGTGCTGTGACACTTTCAGGTGATCTTTATACATGGGGTAATGGTGCATACAATTATGGTCTTTTGGGGCATGGAAATCAAGTGAGCCACTGGGTACCAAAAAGAGTAAATGGCCCCTTGGAAGGCATACATGTTTCATATATTTCATGTGGACCATGGCATACTGCCGTTGTAACATCTGCTGGGCAATTATTCACTTTCGGTGACGGCACATTTGGTGCTTTGGGTCATGGAGACCGAAAAAGTGTTTCATTACCAAGGGAAGTTGAATCCCTCAAAGGTCTTCGTACTATGCGGGCTTCTTGTGGTGTTTGGCATACTGCTGCAGTTGTGGAAGTCATGGTTGGAAATTCAAGTTCCAGTAACTGCTCTTCAGGGAAGCTGTTTACTTGGGGTGATGGAGACAAAGGTCGACTTGGGCACGGTGATAAGGAAGCAAAACTTGTTCCAACCTGTGTTGCCCTTGTTGAACATAACTTTTGTCAAGTTGCTTGTGGACACAGTCTCACTGTTGCACTGACCACCTCAGGCCATGTCTATGCGATGGGAAGTCCTGTCTATGGCCAGTTAGGAAATCCCCAAGCTGATGGGAAGCTACCAACCCGCGTGGAAGGGAAACTGTCAAAGAGTTTTGTGGAGGAGATAGCTTGTGGTGCATATCATGTTGCAGTTCTAACTTTAAGGAATGAAGTTTACACCTGGGGGAAAGGTGCAAATGGACGTTTAGGCCATGGAGATACAGATGATAGAAATAATCCAACACTTGTAGATGCTCTGAAAGACAAACATGTAAAAAGTATTGCTTGTGGAACTAATTTCACTGCAGCTATCTGTCTGCATAAGTGGGTATCTGGTGTTGACCAGTCTATGTGTTCAGGCTGTCGTCTGCCATTTAATTTCAAAAGGAAACGTCACAATTGTTATAATTGTGGACTTGTTTTTTGCCATTCATGCAGCAGTAAGAAGTCTCTTAAGGCCTCAATGGCTCCAAACCCCAACAAACCTTATCGTGTATGTGATGGTTGTTTTAATAAACTTCGGAAAGCTTTAGAAACTGATTCTTCATCTCATTCTTCCATTAGCAGAAGAGGAAGTATTAATCAGGGGTCTCTTGAGTTGATTGACAAGGATGAAAAATTGGATATCAGATCTCGTAATCAACTGGCCAGGTTTTCTTCAATGGAATCCTTTAAACAGGTGGAAAGCAAATCTTCAAAGAAAAACAAGAAATTGGAGTTCAACAGTAGCCGTGTCTCTCCTGCTCCAAATGGGGGCTCACAATGGGGAGCGAATATTTCGAAATCTTTTAATCCTGTTTTTGGATCGTCAAAGAAATTTTTCTCAGCTTCTGTTCCTGGATCTAGAATTGTTTCCCGGGCAACATCCCCAATATCTAGACGGCCTAGCCCACCTCGTTCAACTACTCCAACCCCAACACTGGGAGGTCTTACAACCCCAAAGATAGTCGTGGATGATGCTAAGAAGACTAATGATAGCCTCAGTCAAGAGGTTATTAAATTAAGATCACAGGTGGAAAGCTTGACTCGGAAAACCCAACTTCAAGAAATCGAGTTGGAAAGAACTTCTAAACAGCTAAAAGATGCAATAGCAATTGCTGGGGAAGAAACTGCCAAATGTAAAGCAGCAAAAGAAGTGATCAAGTCACTTACTGCCCAGTTGAAGGACATGGCCGAGAGGCTACCTGTTGGAGCAGCTAAGAGTGTCAAATCACCGTCTCTTGCTTCTGTTGGTTCCAATGAACTTAGCTATGCTTCTGTTGATCGATTAAATATTCAAGCAACAAGCCCAGAAGCCGATTTAACTGGATCAAATAACCTGTTACTTTCAAATGGATCAAGCACTGCCAGTAATCGTAGTACAGGTCAGAATAAAAAGAGCCAGTCAGATACAGCTAATACAAATGGAAGCAGAACAAAGGATAGTGAATCCCGTAGTGAGACTGAATGGGTTGAACAAGATGAACCTGGTGTATATATTACACTAACCTCTCTACCGGGAGGTGTAATAGATCTTAAGAGAGTTCGCTTCAGTCGGAAGCGGTTCAGTGAGAAACAAGCAGAAAATTGGTGGGCCGAGAACCGCACAAGAGTATACGAACAATACAATGTACGCATGATTGACAAGTCCAGTGTTGGTGTTGGGAGTGAGGACCTGGGTCATTGA 3303 0.4342 MEGFGMNSDLSRTGAAERDIEQAITALKKGACLLKYGRRGKPKFCPFRLSNDESVLVWFSGKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRKWRTESRSDGIPSEVNSPRTYTRRSSPLHSPFGCNESLQKDSGDHLRLHSPYESPPKNGLDKALDVVLYAVPQKSFFPLDSASASVHSISSGGSDSMHGHMKTMGMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDGVIGGGNHRVGSGLGVKIDSLFPKALESAVVLDVQNIACGGRHAALVTKQGEIFSWGEESGGRLGHGVESDVLHPKLIDALSNTNIELVACGEYHTCAVTLSGDLYTWGNGAYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSYISCGPWHTAVVTSAGQLFTFGDGTFGALGHGDRKSVSLPREVESLKGLRTMRASCGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVALVEHNFCQVACGHSLTVALTTSGHVYAMGSPVYGQLGNPQADGKLPTRVEGKLSKSFVEEIACGAYHVAVLTLRNEVYTWGKGANGRLGHGDTDDRNNPTLVDALKDKHVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDGCFNKLRKALETDSSSHSSISRRGSINQGSLELIDKDEKLDIRSRNQLARFSSMESFKQVESKSSKKNKKLEFNSSRVSPAPNGGSQWGANISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTTPKIVVDDAKKTNDSLSQEVIKLRSQVESLTRKTQLQEIELERTSKQLKDAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVGAAKSVKSPSLASVGSNELSYASVDRLNIQATSPEADLTGSNNLLLSNGSSTASNRSTGQNKKSQSDTANTNGSRTKDSESRSETEWVEQDEPGVYITLTSLPGGVIDLKRVRFSRKRFSEKQAENWWAENRTRVYEQYNVRMIDKSSVGVGSEDLGH 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04621 1100 MobiDBLite consensus disorder prediction 976 1018 - -
Trre10g04621 1100 Pfam Pleckstrin homology domain 21 127 IPR001849 -
Trre10g04621 1100 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 665 726 IPR013083 -
Trre10g04621 1100 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 499 549 IPR000408 -
Trre10g04621 1100 Pfam Regulator of chromosome condensation (RCC1) repeat 328 376 IPR000408 -
Trre10g04621 1100 Pfam Regulator of chromosome condensation (RCC1) repeat 549 598 IPR000408 -
Trre10g04621 1100 Pfam Regulator of chromosome condensation (RCC1) repeat 603 650 IPR000408 -
Trre10g04621 1100 Pfam Regulator of chromosome condensation (RCC1) repeat 498 546 IPR000408 -
Trre10g04621 1100 Pfam Regulator of chromosome condensation (RCC1) repeat 435 483 IPR000408 -
Trre10g04621 1100 Pfam Regulator of chromosome condensation (RCC1) repeat 379 431 IPR000408 -
Trre10g04621 1100 FunFam PH, RCC1 and FYVE domains-containing protein 1 489 659 - -
Trre10g04621 1100 Pfam FYVE zinc finger 654 720 IPR000306 GO:0046872
Trre10g04621 1100 FunFam Putative E3 ubiquitin-protein ligase HERC1 660 728 - -
Trre10g04621 1100 MobiDBLite consensus disorder prediction 766 802 - -
Trre10g04621 1100 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 602 653 IPR000408 -
Trre10g04621 1100 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 328 379 IPR000408 -
Trre10g04621 1100 MobiDBLite consensus disorder prediction 142 170 - -
Trre10g04621 1100 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 421 431 IPR000408 -
Trre10g04621 1100 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 63 938 - -
Trre10g04621 1100 MobiDBLite consensus disorder prediction 831 859 - -
Trre10g04621 1100 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 550 601 IPR000408 -
Trre10g04621 1100 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 658 720 IPR017455 -
Trre10g04621 1100 ProSiteProfiles BRX domain profile. 1027 1082 IPR013591 -
Trre10g04621 1100 MobiDBLite consensus disorder prediction 787 802 - -
Trre10g04621 1100 MobiDBLite consensus disorder prediction 136 188 - -
Trre10g04621 1100 Coils Coil 863 904 - -
Trre10g04621 1100 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 314 324 IPR000408 -
Trre10g04621 1100 FunFam PH, RCC1 and FYVE domains-containing protein 1 237 488 - -
Trre10g04621 1100 Pfam Transcription factor BRX N-terminal domain 914 947 IPR027988 -
Trre10g04621 1100 PRINTS Chromosome condensation regulator RCC1 signature 311 324 IPR000408 -
Trre10g04621 1100 PRINTS Chromosome condensation regulator RCC1 signature 437 451 IPR000408 -
Trre10g04621 1100 PRINTS Chromosome condensation regulator RCC1 signature 380 396 IPR000408 -
Trre10g04621 1100 PRINTS Chromosome condensation regulator RCC1 signature 421 437 IPR000408 -
Trre10g04621 1100 PRINTS Chromosome condensation regulator RCC1 signature 597 618 IPR000408 -
Trre10g04621 1100 PRINTS Chromosome condensation regulator RCC1 signature 539 557 IPR000408 -
Trre10g04621 1100 PRINTS Chromosome condensation regulator RCC1 signature 330 346 IPR000408 -
Trre10g04621 1100 MobiDBLite consensus disorder prediction 976 1031 - -
Trre10g04621 1100 SUPERFAMILY PH domain-like 19 127 - -
Trre10g04621 1100 Coils Coil 919 939 - -
Trre10g04621 1100 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 380 434 IPR000408 -
Trre10g04621 1100 SUPERFAMILY RCC1/BLIP-II 266 655 IPR009091 -
Trre10g04621 1100 SUPERFAMILY FYVE/PHD zinc finger 654 725 IPR011011 -
Trre10g04621 1100 Gene3D - 216 389 IPR009091 -
Trre10g04621 1100 Gene3D - 566 664 IPR009091 -
Trre10g04621 1100 Gene3D - 390 565 IPR009091 -
Trre10g04621 1100 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 435 486 IPR000408 -
Trre10g04621 1100 Gene3D - 19 136 IPR011993 -
Trre10g04621 1100 Pfam Transcription factor regulating root and shoot growth via Pin3 1026 1081 IPR013591 -
Trre10g04621 1100 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 266 327 IPR000408 -
Trre10g04621 1100 Pfam Unstructured region between BRX_N and BRX domain 956 1020 - -
Trre10g04621 1100 SMART fyve_4 652 721 IPR000306 GO:0046872
Trre10g04621 1100 CDD PH_PLC_plant-like 18 128 - -
Trre10g04621 1100 CDD FYVE_like_SF 663 716 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04621 Trre-Chr10 54987280 54995527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04621 923 1091 Major Intrinsic Protein MIP AT1G31880 34.659 2.15e-17 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04621 - - gmx:100802464 1940.62