Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04620 ATGCATGAGCTAAACTTCCTGATTTTTGGTTGGTGTTTAGAATCAAGTGAGTTGCAACCAGAAGAAAATAAAGCCTCTGCGGAGAAAAATCCGAAAAGAAAGCTCAAAACACCTGCACAGCTTAAGGGCTTGGAGAAATTTTATACTGAGCACAAATATCCGACAGAGGAATTGAAATTAGCGATTGCTGAGGAGTTAGAGTTGACAGAAAAGCAAGTATCTGGATGGTTTTGCCACCGAAGATTAAAAGATAAAAGATTGTTGAAAGAAGAAGCTAATGCTGCTGCTAATGGACGACAAGATCGTTCAAGTGGTGTCATCCAGGATCGTGGCAGTGGACTCGGGCAAGATTCATGTGGAAGCAGTAAACACGGTGATTATAAGTATCTGGATCCTAAGGAGGTTGAGAGCCATGGCCTCTACAATCGTGATTTGTCAGTTGCAGATATGACCTATGGACGTAGGAACCATTTTTCTGAAAATGTTAGTGGAATGGACGATACATCTTCTGACAGTAGCTCTTTTTTGCAAGATCGGTTGTATCCTCAAGGCCAAGATCCATATGAGACCGAGCAATCTAGATATCTAACACATAGTAAAGCTCTTCCGCCCTTAAATCCCAAGGGTACAGTTAACATGGGATATAAACCATCGGGATATTTGAAAGTGAAGGGTGAGATAGAGCATGCTGCTATAACCGCTGTTAAGAAGCAATTAGGAAGGAACTATCGGGAAGATGGTCCGCTACTTGGTATAGAATTTGATCCCCTTCCTCCAGGGGCATTTGAATGCCAAACTGAAGATCCAGTTCATGAACCATACAGTATTGCTGATCCTGCTCTTCTGAATTCTCCAGAAATCCCCACAGTAAAAAGGCGGCCTGGTCTTAGCTCTAGATATGATTCGTATTATACTAAACATGGTTCCCAAGATACTCATACAGAAGGAGATGACTTTGGTTCCTTGCAAGATTCTGACATTCATGATAAACAAGATAAGAAAGCTTTCCATGGTGCAAAACACAGACAAACTTTTCAGAGCAATGCCACTCGTTTTCCTGGAAGGAACTCTCCCTTGGATTTGTATGAAGACTCTACTGGGGAAGCTGCTTATAATATCGCTAAGAATCATAGGAAGGACATCAAGCGCGGTGTTGAGGGGATGAGATCTGATTCTGCCTCTAACCATAGTGATCACTATGAAGAAAACCTTGCAGTTAAACATGCAGACTTTGACTATGATAACATCAATCCAAAGAATGTGCAAAAGAGTGTTCATGCAGACTTTCTGCAACATGACTATGATAAAATCAAGCCAAAGAATGCGCAAAGGAGTGAACCTGTAAAGTCTAAGCCTTCAAATTCAATCCGTAATTCTCGAGGTTCTGTGGATACTGAAGAAAGAGGGCTATCTTCTAGGATGGCTAAGGAAGAGATGTTTAAGGGGGACAAGAAGGCAAAGAAGCAATATCGCGACGCAAGTGGAGCAGGGATGCTTTCAAATGAAACTATGGTTGCAAAACGACTTAAACCCAATTCGTTTCAGCCATACATTATGAAACAATTGCCTGTTGCTGAGATAGAACCAAGGAAAAATCAAAGATCTGCTGCAGAGATGCCGTCTAGCTTTAGCGAGGATGAAACTGCCGATACCAGTTCCTCATTGGATTGA 1671 0.4177 MHELNFLIFGWCLESSELQPEENKASAEKNPKRKLKTPAQLKGLEKFYTEHKYPTEELKLAIAEELELTEKQVSGWFCHRRLKDKRLLKEEANAAANGRQDRSSGVIQDRGSGLGQDSCGSSKHGDYKYLDPKEVESHGLYNRDLSVADMTYGRRNHFSENVSGMDDTSSDSSSFLQDRLYPQGQDPYETEQSRYLTHSKALPPLNPKGTVNMGYKPSGYLKVKGEIEHAAITAVKKQLGRNYREDGPLLGIEFDPLPPGAFECQTEDPVHEPYSIADPALLNSPEIPTVKRRPGLSSRYDSYYTKHGSQDTHTEGDDFGSLQDSDIHDKQDKKAFHGAKHRQTFQSNATRFPGRNSPLDLYEDSTGEAAYNIAKNHRKDIKRGVEGMRSDSASNHSDHYEENLAVKHADFDYDNINPKNVQKSVHADFLQHDYDKIKPKNAQRSEPVKSKPSNSIRNSRGSVDTEERGLSSRMAKEEMFKGDKKAKKQYRDASGAGMLSNETMVAKRLKPNSFQPYIMKQLPVAEIEPRKNQRSAAEMPSSFSEDETADTSSSLD 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04620 556 SMART HOX_1 29 91 IPR001356 GO:0003677
Trre10g04620 556 MobiDBLite consensus disorder prediction 306 339 - -
Trre10g04620 556 ProSiteProfiles 'Homeobox' domain profile. 27 87 IPR001356 GO:0003677
Trre10g04620 556 MobiDBLite consensus disorder prediction 159 188 - -
Trre10g04620 556 MobiDBLite consensus disorder prediction 461 491 - -
Trre10g04620 556 Pfam Homeodomain 32 86 IPR001356 GO:0003677
Trre10g04620 556 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 14 424 - -
Trre10g04620 556 CDD homeodomain 32 86 IPR001356 GO:0003677
Trre10g04620 556 MobiDBLite consensus disorder prediction 535 556 - -
Trre10g04620 556 MobiDBLite consensus disorder prediction 93 125 - -
Trre10g04620 556 SUPERFAMILY Homeodomain-like 27 89 IPR009057 -
Trre10g04620 556 MobiDBLite consensus disorder prediction 285 356 - -
Trre10g04620 556 MobiDBLite consensus disorder prediction 435 496 - -
Trre10g04620 556 Gene3D - 23 96 - -
Trre10g04620 556 MobiDBLite consensus disorder prediction 525 556 - -
Trre10g04620 556 MobiDBLite consensus disorder prediction 97 119 - -
Trre10g04620 556 MobiDBLite consensus disorder prediction 446 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04620 Trre-Chr10 54972426 54977413 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04620 14 556 Homeobox Transcription Factor Family AT4G03250 38.636 2.41e-84 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trre10g04620 Homeodomain 4.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04620 - - gmx:100803515 750.355