Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04619 ATGGAAGAATCAAGTGAGTTGCAACCAGAAGAAAATAAAGCCTCTGCGGAGAAAAATCCGAAAAGAAAGCTCAAAACACCTGCACAGCTTAAGGGCTTGGAGAAATTTTATACTGAGCACAAATATCCGACAGAGGAATTGAAATTAGCGATTGCTGAGGAGTTAGAGTTGACAGAAAAGCAAGTATCTGGATGGTTTTGCCACCGAAGATTAAAAGATAAAAGATTGTTGAAAGAAGAAGCTAATGCTGCTGCTAATGGACGACAAGATCGTTCAAGTGGTGTCATCCAGGATCGTGGCAGTGGACTCGGGCAAGATTCATGTGGAAGCAGTAAACACGGTGATTATAAGTATCTGGATCCTAAGGAGGTTGAGAGCCATGGCCTCTACAATCGTGATTTGTCAGTTGCAGATATGACCTATGGACGTAGGAACCATTTTTCTGAAAATGTTAGTGGAATGGACGATACATCTTCTGACAGTAGCTCTTTTTTGCAAGATCGGTTGTATCCTCAAGGCCAAGATCCATATGAGACCGAGCAATCTAGATATCTAACACATAGTAAAGCTCTTCCGCCCTTAAATCCCAAGGGTACAGTTAACATGGGATATAAACCATCGGGATATTTGAAAGTGAAGGGTGAGATAGAGCATGCTGCTATAACCGCTGTTAAGAAGCAATTAGGAAGGAACTATCGGGAAGATGGTCCGCTACTTGGTATAGAATTTGATCCCCTTCCTCCAGGGGCATTTGAATGCCAAACTGAAGATCCAGTTCATGAACCATACAGTATTGCTGATCCTGCTCTTCTGAATTCTCCAGAAATCCCCACAGTAAAAAGGCGGCCTGGTCTTAGCTCTAGATATGATTCGTATTATACTAAACATGGTTCCCAAGATACTCATACAGAAGGAGATGACTTTGGTTCCTTGCAAGATTCTGACATTCATGATAAACAAGATAAGAAAGCTTTCCATGGTGCAAAACACAGACAAACTTTTCAGAGCAATGCCACTCGTTTTCCTGGAAGGAACTCTCCCTTGGATTTGTATGAAGACTCTACTGGGGAAGCTGCTTATAATATCGCTAAGAATCATAGGAAGGACATCAAGCGCGGTGTTGAGGGGATGAGATCTGATTCTGCCTCTAACCATAGTGATCACTATGAAGAAAACCTTGCAGTTAAACATGCAGACTTTGACTATGATAACATCAATCCAAAGAATGTGCAAAAGAGTGTTCATGCAGACTTTCTGCAACATGACTATGATAAAATCAAGCCAAAGAATGCGCAAAGGAGTGAACCTGTAAAGTCTAAGCCTTCAAATTCAATCCGTAATTCTCGAGGTTCTGTGGATACTGAAGAAAGAGGGCTATCTTCTAGGATGGCTAAGGAAGAGATGTTTAAGGGGGACAAGAAGGCAAAGAAGCAATATCGCGACGCAAGTGGAGCAGGGATGCTTTCAAATGAAACTATGGTTGCAAAACGACTTAAACCCAATTCGTTTCAGCCATACATTATGAAACAATTGCCTGTTGCTGAGATAGAACCAAGGAAAAATCAAAGATCTGCTGCAGAGATGCCGTCTAGCTTTAGCGAGGATGAAACTGCCGATACCAGTTCCTCATTGGATTGA 1638 0.4188 MEESSELQPEENKASAEKNPKRKLKTPAQLKGLEKFYTEHKYPTEELKLAIAEELELTEKQVSGWFCHRRLKDKRLLKEEANAAANGRQDRSSGVIQDRGSGLGQDSCGSSKHGDYKYLDPKEVESHGLYNRDLSVADMTYGRRNHFSENVSGMDDTSSDSSSFLQDRLYPQGQDPYETEQSRYLTHSKALPPLNPKGTVNMGYKPSGYLKVKGEIEHAAITAVKKQLGRNYREDGPLLGIEFDPLPPGAFECQTEDPVHEPYSIADPALLNSPEIPTVKRRPGLSSRYDSYYTKHGSQDTHTEGDDFGSLQDSDIHDKQDKKAFHGAKHRQTFQSNATRFPGRNSPLDLYEDSTGEAAYNIAKNHRKDIKRGVEGMRSDSASNHSDHYEENLAVKHADFDYDNINPKNVQKSVHADFLQHDYDKIKPKNAQRSEPVKSKPSNSIRNSRGSVDTEERGLSSRMAKEEMFKGDKKAKKQYRDASGAGMLSNETMVAKRLKPNSFQPYIMKQLPVAEIEPRKNQRSAAEMPSSFSEDETADTSSSLD 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04619 545 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 413 - -
Trre10g04619 545 CDD homeodomain 21 75 IPR001356 GO:0003677
Trre10g04619 545 SMART HOX_1 18 80 IPR001356 GO:0003677
Trre10g04619 545 MobiDBLite consensus disorder prediction 524 545 - -
Trre10g04619 545 MobiDBLite consensus disorder prediction 86 108 - -
Trre10g04619 545 MobiDBLite consensus disorder prediction 435 449 - -
Trre10g04619 545 SUPERFAMILY Homeodomain-like 16 78 IPR009057 -
Trre10g04619 545 MobiDBLite consensus disorder prediction 424 487 - -
Trre10g04619 545 MobiDBLite consensus disorder prediction 274 345 - -
Trre10g04619 545 Gene3D - 12 85 - -
Trre10g04619 545 MobiDBLite consensus disorder prediction 450 480 - -
Trre10g04619 545 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Trre10g04619 545 MobiDBLite consensus disorder prediction 7 28 - -
Trre10g04619 545 MobiDBLite consensus disorder prediction 295 328 - -
Trre10g04619 545 MobiDBLite consensus disorder prediction 514 545 - -
Trre10g04619 545 Pfam Homeodomain 21 75 IPR001356 GO:0003677
Trre10g04619 545 MobiDBLite consensus disorder prediction 82 114 - -
Trre10g04619 545 MobiDBLite consensus disorder prediction 1 28 - -
Trre10g04619 545 MobiDBLite consensus disorder prediction 148 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04619 Trre-Chr10 54971718 54977413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04619 3 545 Homeobox Transcription Factor Family AT4G03250 38.636 1.39e-84 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trre10g04619 Homeodomain 4.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04619 - - gmx:100803515 754.207