Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04615 ATGGTTGACCTCTTCTTTGAAAGACCATTGGATGAAAGGACTCAGCTTCTGAGGGAAGGATCACATGGATTTCAATTTGTGGCTACTACAAGGAGACTGCCTTCAGATTCAGGAGCTTTTGCTGATTGGGCAGCAACTTCATCATCAACAGTTCGTGCTGCTGCTCCAGAAGATCTATCACTCGGTTTCAATGCGGGTCCCACCGCCGGAAACGCCGGACCTTCCACCGGACCCACCACCGGAATATGGCATGGTGGTGGTGGTGGTTCTAGGTCCGTTAATTACGGACCTGAAATGGGTATGTTTGTTGTAGCACCATCTCCTTATCATCCTCATCACCACCATCATAGCCACCATAATAACCACCATGAAGCTATTATCTCCGATCCTCATTCTCTTAACCCCGCCACCGCTCTCGGCGTCGGAGTTATTCCTTTACTCACTGCTTCTCCTTGTCTTGAAAATGAAAGACAACAACAAGGAATTCAGTTTTGGCATGAACAACAACAACAACATCAACATCATTCAAATTATTTGAAAAAACATCAAGGTTTTCTTGATCATCATATTAATACAAGTCCAACAAATTTAGTTCATCACGGTGGTGGTGGTGGAGGGTTAACTGGTTCTGGAACAAGTAGTGGTGGTGGAACAACTACATGTCAAGATTGTGGAAATCAAGCAAAAAAAGATTGTAGTAATAGAAGATGTAGAACTTGTTGTAAAAGTAGAGGTTTTGATTGCCCTACTCATGTTAAGAGTACTTGGGTACCTGCTGCTAGAAGAAGAGAACGTCTTGCTTCGGCGGGGACGACGACGACGGTGGTTGCTGCCGGTGGTTCTAGTGGTTCAACTTCTGGTGCTAAGAAACCTAGACTTATTGCTTCACAAACTACTTCTCATACTTCTACTTCTAATACTACCCCTCCTAGAAGCTTTGACACTACCTCTAGCCATCAAGATGCAGGTTTTAAAGAGTCAATGCCAGGTCAAGTACGTGCACCAGCAGTATTCAAGTGTGTTAGAGTGACATCAGTGGATGATGGAAAAGATGAATATGCATATCAAGCAGTAGTGAAAATTGGTGGCCATGTTTTCAAAGGTTTTCTTTATGATCATGGTGTTGAGAATAGAGAAGTTTATCCAAACCTTTCTGAGCTTCATTTAGGAGGTGGTGGTGGTAATAATAATAATAATGGTGGTGCTAATAGAAATGGAGTTTCATCTTCATCACCAATGTTGGATCCTTCTCATGATGTTTATGCAGCAGCTTCAAGTGGTGTTGGAGGATTACTAGGAGGTTCAGCTTATGATAGTAAGGGTTCATCTTTGGTGGTGCTTAAAGAATTCATCTTTGTGTCATTTGTGAGGGGTCTATATTTGGCGGGTCTTCTGCAACCCTTCTTAGAAGTCGGGTAG 1419 0.4299 MVDLFFERPLDERTQLLREGSHGFQFVATTRRLPSDSGAFADWAATSSSTVRAAAPEDLSLGFNAGPTAGNAGPSTGPTTGIWHGGGGGSRSVNYGPEMGMFVVAPSPYHPHHHHHSHHNNHHEAIISDPHSLNPATALGVGVIPLLTASPCLENERQQQGIQFWHEQQQQHQHHSNYLKKHQGFLDHHINTSPTNLVHHGGGGGGLTGSGTSSGGGTTTCQDCGNQAKKDCSNRRCRTCCKSRGFDCPTHVKSTWVPAARRRERLASAGTTTTVVAAGGSSGSTSGAKKPRLIASQTTSHTSTSNTTPPRSFDTTSSHQDAGFKESMPGQVRAPAVFKCVRVTSVDDGKDEYAYQAVVKIGGHVFKGFLYDHGVENREVYPNLSELHLGGGGGNNNNNGGANRNGVSSSSPMLDPSHDVYAAASSGVGGLLGGSAYDSKGSSLVVLKEFIFVSFVRGLYLAGLLQPFLEVG 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04615 472 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 118 423 IPR007818 GO:0003700|GO:0006355
Trre10g04615 472 MobiDBLite consensus disorder prediction 266 328 - -
Trre10g04615 472 MobiDBLite consensus disorder prediction 391 411 - -
Trre10g04615 472 NCBIfam putative zinc finger domain, LRP1 type 220 262 IPR006510 -
Trre10g04615 472 NCBIfam LRP1 C-terminal domain 328 375 IPR006511 -
Trre10g04615 472 MobiDBLite consensus disorder prediction 267 324 - -
Trre10g04615 472 Pfam Domain of unknown function (DUF702) 218 376 - -
Trre10g04615 472 MobiDBLite consensus disorder prediction 67 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04615 Trre-Chr10 54902826 54910068 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04615 27 421 C2H2 Transcription Factor Family AT5G12330 50.000 9.88e-97 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Trre10g04615 DUF702 3.4e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04615 - - tpra:123922661 613.224