Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04600 ATGTTGAGAGTTTATCAATTAAGAAGAGTTGGATTGTTGATTCCAAAACTCTCTTCATTTTCCACAATTCCTTCACTCTTCTCTTTTCCTTCTCATTCTCACTCACAAATCCACACTTTTTCATCCTCAAAAACCATCCATTTTCACTCACATTCTTCTCTTACTCTTTCACCACTCACTTCTATCAAGCCTCCCAAATCAACAGCTTCATATAGCACTGAAGGTAGTGGTGTTGAAGGTGGTAGGGAAAGGGAAATATTGGTGCAACATTTATTGGTGAAAGAAGATAACCAGAAACTACTATTGGATCTTCAAAAGAGAATCTCTGCAGGTGAAGATTTGAAGGATCTTGCTGTGGACCATTCAATTTGCCCTTCAAAAGATGAAGGAGGAGTGCTAGGGTGGGTGAGAAAGGGACAAATGGTTCCTGAACTTGAGGAGGCTGTGTTTAATGCACCTTTAAACAAAGTTGTAATGTGTAAGACAGAATTTGGATGGCACCTGCTGCAGGTTTTATCTGAAAGGGAAGAGTCTGTATTTCAAGACATTCAACCTGATGAGCTGCATGTGAAACTTCAAGATCCCAGCTTCTCGGAAAAGGCGCGGTTAATTGATATTCGAGAGCCTCAAGAAGTGGAGAAAGCATCTTTACCAGGATTTAAGGTTCTTTCCCTCTTACAATTTGGAACATGGGGGTCTGAGATAAACTCCAAATTTGATCTTCAAAAGGATACCTATGTTCTGTGTCATCACGGCATACGGTCGTTACAGGTTGCCAGGTGGTTGCAGTCAAAGGGGTTCAGGAAAGTATACAATATTTTTGGAGGAATCCATGCCTATGCGGAGCAGGTCAATCCGTCGGTTCCTACATACAAGAGAGAAAATTTCGGTGACAGGACTCCGTTCAATATTTTAGCAGGTCACCCTTTCAAAACTGTCAACTTTTACTTGAGAGGCAAGGCATCCGATGGTCGCAAATAA 981 0.4139 MLRVYQLRRVGLLIPKLSSFSTIPSLFSFPSHSHSQIHTFSSSKTIHFHSHSSLTLSPLTSIKPPKSTASYSTEGSGVEGGREREILVQHLLVKEDNQKLLLDLQKRISAGEDLKDLAVDHSICPSKDEGGVLGWVRKGQMVPELEEAVFNAPLNKVVMCKTEFGWHLLQVLSEREESVFQDIQPDELHVKLQDPSFSEKARLIDIREPQEVEKASLPGFKVLSLLQFGTWGSEINSKFDLQKDTYVLCHHGIRSLQVARWLQSKGFRKVYNIFGGIHAYAEQVNPSVPTYKRENFGDRTPFNILAGHPFKTVNFYLRGKASDGRK 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04600 326 Gene3D - 81 176 IPR046357 GO:0003755
Trre10g04600 326 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 291 - -
Trre10g04600 326 ProSiteProfiles PpiC-type peptidyl-prolyl cis-trans isomerase family profile. 83 173 IPR000297 GO:0003755
Trre10g04600 326 Pfam PPIC-type PPIASE domain 90 173 - -
Trre10g04600 326 SUPERFAMILY FKBP-like 84 172 - -
Trre10g04600 326 Pfam Rhodanese-like domain 198 282 IPR001763 -
Trre10g04600 326 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 178 293 IPR036873 -
Trre10g04600 326 ProSiteProfiles Rhodanese domain profile. 197 289 IPR001763 -
Trre10g04600 326 Gene3D - 177 303 IPR036873 -
Trre10g04600 326 SMART rhod_4 183 286 IPR001763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04600 Trre-Chr10 54798441 54801582 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04600 84 291 Sulfurtransferasese or Rhodanese AT5G19370 62.981 3.48e-93 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04600 - - mtr:112421875 476.092