Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04597 ATGGGCAATTGTTGCTCAGGTGGCACTGAAGACCCTCAAGATAAGGGAGAAACCAATCAACAAAACGACAATGCAAATGGAGATTCTTCGGCTACAACGCCGCCACCAGCATCAAAACCAGCCTCTCAATCTTGTAAACCATCAAAACCGGCCGCGATGGGTCCTGTTCTCGGAAGACCAATGGAAGATGTAAAAGCTACTTATAGCATAGGGAAGGAACTTGGAAGAGGACAATTTGGTGTAACACATTTATGCACACACAAAACCACAGGAAAACAATATGCTTGCAAAACAATTGCCAAGAGAAAGCTTGTTAACAAGGAAGATATCGAGGATGTAAGAAGGGAGGTTCAGATTATGCATCATCTCACAGGACAGCCTAATATTGTCGAACTTCTTGGTGCTTATGAAGATAAACAATCTGTTCATTTGGTTATGGAGTTGTGTGCAGGTGGTGAACTATTCGATCGAATCATCGCTAAGGGTCATTATACCGAACGAGCTGCGGCTTCCTTGTTGAGAACCATTGTACAGATTGTTCACACATGTCATTCCATGGGTGTTATTCATAGAGATCTTAAGCCTGAGAATTTCCTATTGTTGAACAAGGATGAGAATTCTCCTCTCAAAGCCACCGATTTCGGTTTATCTGTCTTTTACAAGCAAGGAGAAACATTCAAAGATATTGTTGGAAGTGCATATTACATTGCACCTGAGGTTTTGAAGAGGAAATATGGACCAGAAGTTGACATTTGGAGTGTTGGTGTCATGTTATACATTCTTCTATGTGGTGTTCCACCATTTTGGGCAGAATCTGAAAATGGGATATTCAATGCCATCCTAAGAGGCCACGTTGACTTTTCGAGCGATCCATGGCCTTCCATTTCACCTGCAGCAAAAGATCTTGTAAGGAAAATGTTGAATTCAGATCCCAAGCAGAGGCTAACAGCATATGAAGTTTTGAATCATCCTTGGATCAAGGAAGATGGAGAAGCACCAGATACACCTCTTGATAATGCAGTGCTCAATAGGCTCAAACAGTTTAGAGCAATGAATCAATTCAAGAAAGTTGCTCTAAAGGTTATTGCTAGCTGCTTATCAGAGGAAGAAATCATGGGATTGAAGCAGATGTTTAAGGGTATGGACACTGACAACAGTGGAACCATTACAATTGAAGAGCTCAAGCAAGGACTTGCAAAACAAGGAACTAAACTGTCTGAACAAGAAGTTAAGCAATTAATGGAAGCTGCAGATGCTGATGGTAATGGAATCATAGACTACGACGAGTTCATCACAGCAACAATGGCCATGAACCGAATGAACAGAGAAGAACATGTTTACACTGCCTTCCAATACTTCGATAAAGATAACAGCGGGTTCATTACTATTGAAGAACTAGAGCAAGCTCTCCATGAGTATAACATGCATGACGGCAGGGACATCAAGGAAATCATTTCAGAAGTTGATGCAGATAATGATGGTCGGATTAACTACGATGAATTTGTTGCTATGATGAGCAAAGGAAACCCAGAAGCAAATACCAGGAAGAGGCGCGATTCAACTTTGTATTAG 1572 0.4128 MGNCCSGGTEDPQDKGETNQQNDNANGDSSATTPPPASKPASQSCKPSKPAAMGPVLGRPMEDVKATYSIGKELGRGQFGVTHLCTHKTTGKQYACKTIAKRKLVNKEDIEDVRREVQIMHHLTGQPNIVELLGAYEDKQSVHLVMELCAGGELFDRIIAKGHYTERAAASLLRTIVQIVHTCHSMGVIHRDLKPENFLLLNKDENSPLKATDFGLSVFYKQGETFKDIVGSAYYIAPEVLKRKYGPEVDIWSVGVMLYILLCGVPPFWAESENGIFNAILRGHVDFSSDPWPSISPAAKDLVRKMLNSDPKQRLTAYEVLNHPWIKEDGEAPDTPLDNAVLNRLKQFRAMNQFKKVALKVIASCLSEEEIMGLKQMFKGMDTDNSGTITIEELKQGLAKQGTKLSEQEVKQLMEAADADGNGIIDYDEFITATMAMNRMNREEHVYTAFQYFDKDNSGFITIEELEQALHEYNMHDGRDIKEIISEVDADNDGRINYDEFVAMMSKGNPEANTRKRRDSTLY 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04597 523 Gene3D Phosphorylase Kinase; domain 1 70 153 - -
Trre10g04597 523 MobiDBLite consensus disorder prediction 12 45 - -
Trre10g04597 523 Pfam Protein kinase domain 68 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04597 523 MobiDBLite consensus disorder prediction 1 58 - -
Trre10g04597 523 ProSitePatterns Protein kinases ATP-binding region signature. 74 101 IPR017441 GO:0005524
Trre10g04597 523 SMART serkin_6 68 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04597 523 ProSiteProfiles EF-hand calcium-binding domain profile. 480 511 IPR002048 GO:0005509
Trre10g04597 523 SMART efh_1 373 401 IPR002048 GO:0005509
Trre10g04597 523 SMART efh_1 480 508 IPR002048 GO:0005509
Trre10g04597 523 SMART efh_1 445 473 IPR002048 GO:0005509
Trre10g04597 523 SMART efh_1 409 437 IPR002048 GO:0005509
Trre10g04597 523 ProSitePatterns EF-hand calcium-binding domain. 382 394 IPR018247 -
Trre10g04597 523 ProSitePatterns EF-hand calcium-binding domain. 489 501 IPR018247 -
Trre10g04597 523 ProSiteProfiles EF-hand calcium-binding domain profile. 441 476 IPR002048 GO:0005509
Trre10g04597 523 Gene3D - 334 510 - -
Trre10g04597 523 FunFam calcium-dependent protein kinase 1 154 333 - -
Trre10g04597 523 FunFam Calcium-dependent protein kinase 1 70 153 - -
Trre10g04597 523 ProSitePatterns EF-hand calcium-binding domain. 418 430 IPR018247 -
Trre10g04597 523 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Trre10g04597 523 ProSiteProfiles EF-hand calcium-binding domain profile. 405 440 IPR002048 GO:0005509
Trre10g04597 523 PANTHER SERINE/THREONINE-PROTEIN KINASE 63 501 - -
Trre10g04597 523 Gene3D Transferase(Phosphotransferase) domain 1 154 333 - -
Trre10g04597 523 FunFam Calcium-dependent protein kinase 1 334 509 - -
Trre10g04597 523 Pfam EF-hand domain pair 444 506 IPR002048 GO:0005509
Trre10g04597 523 Pfam EF-hand domain pair 374 434 IPR002048 GO:0005509
Trre10g04597 523 CDD STKc_CAMK 68 325 - -
Trre10g04597 523 ProSiteProfiles Protein kinase domain profile. 68 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04597 523 ProSiteProfiles EF-hand calcium-binding domain profile. 369 404 IPR002048 GO:0005509
Trre10g04597 523 SUPERFAMILY Protein kinase-like (PK-like) 52 354 IPR011009 -
Trre10g04597 523 ProSitePatterns EF-hand calcium-binding domain. 454 466 IPR018247 -
Trre10g04597 523 SUPERFAMILY EF-hand 366 507 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04597 Trre-Chr10 54769736 54772147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04597 1 522 EF-hand Containing Proteins AT5G12180 81.818 0.0 901
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trre10g04597 Pkinase 3e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04597 K13412 - gmx:100819061 930.628