Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04596 ATGACAACAATCAGTCTCCGGAAAGGAAACACACGACTCCCACCGGAAGTTAACCGCGTCCTCTACGTCCGCAACCTTCCATTCAACATAACAAGCGAAGAAATGTACGATATATTCGGCAAATACGGTGCAATTCGTCAGATCCGAATCGGAACAAACAAAGACACTCGCGGCACTGCTTTCGTCGTTTACGAAGACATCTACGATGCTAAAACTGCCGTCGATCATCTCTCCGGTTTCAATGTTGCTAATCGGTATCTTATTGTTCTTTATTATCAACAAGCGAAGATGAGTAAGAAGTTTGATCAGAAGAAGAAGGAAGATGAGATTACGAAGATGCAGGAGAAGTATGGTGTTTCTACCAAAGACAGCAAGTAG 378 0.4339 MTTISLRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEITKMQEKYGVSTKDSK 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04596 125 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 21 116 - -
Trre10g04596 125 SMART rrm1_1 20 90 IPR000504 GO:0003723
Trre10g04596 125 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 87 IPR000504 GO:0003723
Trre10g04596 125 CDD RRM_SF3B14 17 93 IPR034150 -
Trre10g04596 125 SUPERFAMILY RNA-binding domain, RBD 7 102 IPR035979 GO:0003676
Trre10g04596 125 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 94 IPR000504 GO:0003723
Trre10g04596 125 Gene3D - 15 121 IPR012677 -
Trre10g04596 125 FunFam splicing factor 3B subunit 6-like protein 15 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04596 Trre-Chr10 54767350 54767727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04596 21 113 Eukaryotic Initiation Factors Gene Family AT2G36660 31.579 1.63e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04596 K12833 - thj:104811201 243.432