Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04589 ATGGAATCTCAGAAGTCAGTGCCTGCTCCTTTCTTGACAAAGACATATCAACTTGTTGATGATCCTCTCACTGACCACATTGTATCTTGGAGTGATGATGAAACTACATTTGTTGTTTGGAGACCTTCTGAGTTTGCTAGAGATCTTCTTCCCAATTTTTTCAAGCACAACAACTTCTCAAGCTTTGTTAGGCAACTAAATACCTATGGTTTCAAGAAGGTGGTTGCTGATAGATGGGAGTTTGCAAATGAATACTTCAAAAAAGGAGCTAAGCAACTATTATGTGAAATCCACAGAAGAAAAACTCCTCAACACTATCAACAACAATACTATGAAACACAATCACCACAAATTCTTCAACAAGATCATGAAAGTTTTTGTTGGATTGATTCTCCATTACCATCTCCTAAATCAAACACTGATATCTTAACAGCACTCTCTGAAGACAATCAAAGACTAAGAAAAAAAAATTTCATGCTCTTATCAGAACTCACTCACATGAAGAATCTTTACAATGATATTATATATTTCATTCAAAATCATGTGAGTCCTGCTACACCTTTTGAACAAAGAAGCAACAATAGTGCTATTTTGAAGCTTGTTGAATTGGATTCATCAGCATCACAATTAGCAAATGATAATAATGTGGTTAAGGATAGTAATAGTTCTTATGTGAAACTCTTTGGTGTTCCTCTTTGTGGTAAAAAGAGAGTGCATCCAAGTAATCTTGATTAA 735 0.3456 MESQKSVPAPFLTKTYQLVDDPLTDHIVSWSDDETTFVVWRPSEFARDLLPNFFKHNNFSSFVRQLNTYGFKKVVADRWEFANEYFKKGAKQLLCEIHRRKTPQHYQQQYYETQSPQILQQDHESFCWIDSPLPSPKSNTDILTALSEDNQRLRKKNFMLLSELTHMKNLYNDIIYFIQNHVSPATPFEQRSNNSAILKLVELDSSASQLANDNNVVKDSNSSYVKLFGVPLCGKKRVHPSNLD 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04589 244 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre10g04589 244 PRINTS Heat shock factor (HSF) domain signature 49 61 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre10g04589 244 PRINTS Heat shock factor (HSF) domain signature 11 34 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre10g04589 244 Pfam HSF-type DNA-binding 11 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre10g04589 244 Gene3D - 3 102 IPR036388 -
Trre10g04589 244 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 4 192 IPR027725 -
Trre10g04589 244 SMART hsfneu3 7 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre10g04589 244 SUPERFAMILY "Winged helix" DNA-binding domain 8 100 IPR036390 -
Trre10g04589 244 FunFam Heat stress transcription factor B-4 3 101 - -
Trre10g04589 244 ProSitePatterns HSF-type DNA-binding domain signature. 50 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04589 Trre-Chr10 54732229 54733770 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04589 5 239 HSF AT1G46264 49.662 8.81e-87 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Trre10g04589 HSF_DNA-bind 2.1e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04589 K09419 - gmx:100527682 379.793