Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04588 ATGGCTTTCACACTAGAGAGATGTGAAGATAACATGATGTTCACTATGGAATCTCAGAAGTCAGTGCCTGCTCCTTTCTTGACAAAGACATATCAACTTGTTGATGATCCTCTCACTGACCACATTGTATCTTGGAGTGATGATGAAACTACATTTGTTGTTTGGAGACCTTCTGAGTTTGCTAGAGATCTTCTTCCCAATTTTTTCAAGCACAACAACTTCTCAAGCTTTGTTAGGCAACTAAATACCTATGGTTTCAAGAAGGTGGTTGCTGATAGATGGGAGTTTGCAAATGAATACTTCAAAAAAGGAGCTAAGCAACTATTATGTGAAATCCACAGAAGAAAAACTCCTCAACACTATCAACAACAATACTATGAAACACAATCACCACAAATTCTTCAACAAGATCATGAAAGTTTTTGTTGGATTGATTCTCCATTACCATCTCCTAAATCAAACACTGATATCTTAACAGCACTCTCTGAAGACAATCAAAGACTAAGAAAAAAAAATTTCATGCTCTTATCAGAACTCACTCACATGAAGAATCTTTACAATGATATTATATATTTCATTCAAAATCATGTGAGTCCTGCTACACCTTTTGAACAAAGAAGCAACAATAGTGCTATTTTGAAGCTTGTTGAATTGGATTCATCAGCATCACAATTAGCAAATGATAATAATGTGGTTAAGGATAGTAATAGTTCTTATGTGAAACTCTTTGGTGTTCCTCTTTGTGGTAAAAAGAGAGTGCATCCAAGTAATCTTGATTAA 780 0.3474 MAFTLERCEDNMMFTMESQKSVPAPFLTKTYQLVDDPLTDHIVSWSDDETTFVVWRPSEFARDLLPNFFKHNNFSSFVRQLNTYGFKKVVADRWEFANEYFKKGAKQLLCEIHRRKTPQHYQQQYYETQSPQILQQDHESFCWIDSPLPSPKSNTDILTALSEDNQRLRKKNFMLLSELTHMKNLYNDIIYFIQNHVSPATPFEQRSNNSAILKLVELDSSASQLANDNNVVKDSNSSYVKLFGVPLCGKKRVHPSNLD 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04588 259 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre10g04588 259 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
Trre10g04588 259 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 17 207 IPR027725 -
Trre10g04588 259 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre10g04588 259 Gene3D - 18 117 IPR036388 -
Trre10g04588 259 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre10g04588 259 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre10g04588 259 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre10g04588 259 FunFam Heat stress transcription factor B-4 18 116 - -
Trre10g04588 259 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04588 Trre-Chr10 54732229 54733815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04588 10 254 HSF AT1G46264 48.534 7.39e-87 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Trre10g04588 HSF_DNA-bind 2.4e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04588 K09419 - gmx:100527682 406.371