Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04585 ATGGCAAACAACAATTGTGCTCCCTCATTTTTCACTCCAAACTCTATGAATGAATCCTCAGAGAACAATCCTGTGAAATCTTACACAGGTAACAAGAGAGGATACATGGTCACAAACAATGACACATTGGTGATGCCAACACAATCATATGTACCACCCTCTACTACTAGGGTTGTTGATCCCCCTCAAGAGCCACTTGAGGACATTATCACACCCTCCACCAAAAAACCTAGGGGTAGACCCTTAGGTTCTAAGAACAAACCAAAACCACCCCCTAGCCCCCTTGTGCAACTTGCTACCTTTGAAATCCCTGCAGGAATGGATATTCCGGGGATTTTAATTAACTATGCTCGGGAAAATAATTTTGGCATAGCAGTTTTGAGTGGTTTTGGGACTATCTCTAGTGTTACATTACTCGATCCGATATCTTTTACACCAAATTCCCCCATTGCTGGACCTTTTTACATGACATCTTTCACGGGAACATATGTGAATCCCAATTGTCATAGAATTTCTCCTATATTCATCAATAATCCAATATCTTCATGTTTTTCCATTTTTCTTGCTAGCAATGATGAACATGTGCATGGTGGAATTGTTGGGGGAGAAGTTATTACTGCTGATGTTGTTACTATTACAACCCTTCTTTTTAGGACACATGAGATCTATCGAGAAGGATTTGGCAATGGTGGTGGTGTCATCAACAATGTTGGTCTTGTTGCACCTCAACCTAACAACATCAACAACATTGTAGCTGATGTGCCAAATTTCAATGCTGTAGGTGCTGATTCAATTCAGCCAAATTACCAAATGCCCCCTCATCATCTACCTAATGATTATGATGTGATGCAGTGGAATGATTTCACTCGCTTTAATAGCTACTAG 885 0.4045 MANNNCAPSFFTPNSMNESSENNPVKSYTGNKRGYMVTNNDTLVMPTQSYVPPSTTRVVDPPQEPLEDIITPSTKKPRGRPLGSKNKPKPPPSPLVQLATFEIPAGMDIPGILINYARENNFGIAVLSGFGTISSVTLLDPISFTPNSPIAGPFYMTSFTGTYVNPNCHRISPIFINNPISSCFSIFLASNDEHVHGGIVGGEVITADVVTITTLLFRTHEIYREGFGNGGGVINNVGLVAPQPNNINNIVADVPNFNAVGADSIQPNYQMPPHHLPNDYDVMQWNDFTRFNSY 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04585 294 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 55 223 IPR014476 GO:0003680
Trre10g04585 294 Pfam Plants and Prokaryotes Conserved (PCC) domain 100 214 IPR005175 -
Trre10g04585 294 CDD DUF296 101 215 IPR005175 -
Trre10g04585 294 Gene3D - 96 236 - -
Trre10g04585 294 SUPERFAMILY AF0104/ALDC/Ptd012-like 99 221 - -
Trre10g04585 294 ProSiteProfiles PPC domain profile profile. 92 243 IPR005175 -
Trre10g04585 294 MobiDBLite consensus disorder prediction 1 94 - -
Trre10g04585 294 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04585 Trre-Chr10 54707767 54708651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04585 75 224 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 33.544 1.45e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04585 - - psat:127121089 179.874