Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04578 ATGGCTTCTAGAGCTATTGCTCCGATTCAACATAGAGGTGAGAATAATAATAATAAGCCAAAGAATGTTGTTGGGGTAGAAGGAGGAAGAAACAGAAGAGTTCTTCAAGATATTGGAAATCTTGTGATTAATCAAGCAGATCCTGCTGCTAATGCTAATGTGCCTAAGCGCATCACAAGGGCTCAATTAGCAGCTCTTGCTCAAGCCGCCGCAGAGAAGACCAAGAAATCAATCCCTGAACTTGTCAATGGACCTAATGTTGCTGCAACAAAGGTGGAACAAGCTCTAAAGCCTGCAGAACCTGAAGTTATTGTCATCAGCTCTGATGATGAATCTGAAGTGAAAGAGAAACAAGCTGATAAAGGAAGAAAGATAAGAGAAAGGTCCTCAAAGAAAAATGCTAAGGCCTTTAGTTCAGTACTTTCAGCTAGAAGCAAGGCTGCTGGCAGAATTATGCCAAAGGATTTTGTTGAGAACATTGATGCAACTGATAAGGACAATGAATTGGCTGCAACTGAGTACATTGATGACATCTATCAGTATTACAAACTCTCTGAAGATGATGTCCGTGTACATGATTACATGGCTTCTCAGCCAGATATAAATGCCAAGATGAGATCAATCCTTGTTGACTGGTTGATTGAAGTTCATAGAAAATTTGAACTTATGCCAGAAACTTTCTATCTGACTCTTAATATTGTTGACCGATTCTTGTCCACTAAGGCTGTACCTAGAAAGGAACTTCAGCTTGTTGGCATAAGCGCTATGCTTATAGCTTCCAAATATGAAGAGATTTGGGCACCAGAGGTTAATGACTTTGTATGCATATCAGACAATGCATATGTCAGAGAACAGGTTCTGGTTATGGAGAAAACAATCTTGAGAAAACTGGAATGGTATTTGACAGTTCCTACTCCTTATGTCTTTCTGATTCGGTACATCAAAGCCTCGACTCCCTCTGATAAAGAGATGGAAAACATGGTGAATTTCTTAGCTGAGCTTTCTATGATGCATTATGCTACTGTTTCCTCGTATTGCCCTTCAATGATCGCTGCTTCTGCTGTTTATGCGGCAAGATCTACCCTTGAGAGGAGCCCGGTTTGGACTGATACACTAAAGCACTACACAGGCTACTCCGAGGAACAACTAAGGGATTGTGCCAAACTCATGGTTAGCTTTCATTCTGAAGCTCCAGAAAGTAAGCTGAGGGCAATTTACAAGAAATTCTGTAGCACGGATCGTTGCGCTGTTGCTCTTAGGACTCCAGCAAAAAACTTGTCAGCAGAATCTTGA 1293 0.4107 MASRAIAPIQHRGENNNNKPKNVVGVEGGRNRRVLQDIGNLVINQADPAANANVPKRITRAQLAALAQAAAEKTKKSIPELVNGPNVAATKVEQALKPAEPEVIVISSDDESEVKEKQADKGRKIRERSSKKNAKAFSSVLSARSKAAGRIMPKDFVENIDATDKDNELAATEYIDDIYQYYKLSEDDVRVHDYMASQPDINAKMRSILVDWLIEVHRKFELMPETFYLTLNIVDRFLSTKAVPRKELQLVGISAMLIASKYEEIWAPEVNDFVCISDNAYVREQVLVMEKTILRKLEWYLTVPTPYVFLIRYIKASTPSDKEMENMVNFLAELSMMHYATVSSYCPSMIAASAVYAARSTLERSPVWTDTLKHYTGYSEEQLRDCAKLMVSFHSEAPESKLRAIYKKFCSTDRCAVALRTPAKNLSAES 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04578 430 PANTHER CYCLINS 131 408 IPR039361 -
Trre10g04578 430 SUPERFAMILY Cyclin-like 305 425 IPR036915 -
Trre10g04578 430 SMART Cyclin_C_2 304 423 IPR004367 -
Trre10g04578 430 PIRSF Cyclin_A_B_D_E 2 430 IPR046965 GO:0016538|GO:0044772
Trre10g04578 430 Gene3D - 191 302 - -
Trre10g04578 430 MobiDBLite consensus disorder prediction 109 128 - -
Trre10g04578 430 Pfam Cyclin, C-terminal domain 304 419 IPR004367 -
Trre10g04578 430 CDD CYCLIN_AtCycB-like_rpt1 154 299 - -
Trre10g04578 430 ProSitePatterns Cyclins signature. 206 237 IPR006671 -
Trre10g04578 430 Pfam Cyclin, N-terminal domain 177 301 IPR006671 -
Trre10g04578 430 FunFam G2/mitotic-specific cyclin-1 292 418 - -
Trre10g04578 430 SUPERFAMILY Cyclin-like 166 301 IPR036915 -
Trre10g04578 430 SMART cyclin_7 308 392 IPR013763 -
Trre10g04578 430 SMART cyclin_7 211 295 IPR013763 -
Trre10g04578 430 MobiDBLite consensus disorder prediction 1 28 - -
Trre10g04578 430 Gene3D - 177 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04578 Trre-Chr10 54603153 54605698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04578 1 419 Core Cell Cycle Gene Families AT2G26760 50.238 1.10e-139 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04578 K21777 - gmx:547782 561.222