Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04565 ATGAGGAAGAAACTGGATACTCGTTTCCCTGCTGCTAGGATTAAGAGAATTATGCAATCTGATGAAGATGTTGGGAAGATTGCAATGGCTGTGCCTCTTCTAGTTTCAAAAGCATTAGAGCAATTTCTGCAAGATTTGTGCAATAGAACATATGCAATAACACTTATGAAGGGAGCGAAGACCGTGAATGCTTTTCATTTAAAACAGTGCGTACAAACCTTTAGTGTCTTTGATTTTCTAAACGATATTGTGAGCAAGGTTCCTGATTTAGGTGGTTCTATCGCAACTGGTGACGACCAAACTGTCCCGAAGAGGAGGAAAGTTGCGGAAGATGATGATAATGACAGCGACGAGGAGACTAAGAGAAATAAAATGCCAGAACCTGCACAAACCGGTGGAAGAGGAAGGGGTAGAGGAAGAGGAAGGGGTCGTGGCCGTGGCCGTGGAAGTAAAACCGCAGATCAAGAGACAAGCTCACATGTCAAGTTTGAAGATGACTCTGATGTATTCACACAAAATGGCAACCACACTCAAAGTAATGAAAGTCCCGAAATTGTGCAAGAATCCGAGGAAGTTAAGCATTGTTCACCAGTCAGAAAACCGGCTGAAGTGTTTGTTCGAAATTTCGATTTAAATATGGATCCGGATGAGGACATGGATTTAATATCCACACCAACTCCTATCCCAACTGGTTCATCTTCAAAATCAATTTCAGAAGAGAAAGTTGATGAATATCCTGGATGGTCCTTGTCTGATATGGAAAAAATGGCCATTGATCCTATTCAACTTGCCAACTTAAATAAAAGGATTGATGAAGATATGGAAGATTATGATGAAGAAGTGTAG 846 0.4102 MRKKLDTRFPAARIKRIMQSDEDVGKIAMAVPLLVSKALEQFLQDLCNRTYAITLMKGAKTVNAFHLKQCVQTFSVFDFLNDIVSKVPDLGGSIATGDDQTVPKRRKVAEDDDNDSDEETKRNKMPEPAQTGGRGRGRGRGRGRGRGRGSKTADQETSSHVKFEDDSDVFTQNGNHTQSNESPEIVQESEEVKHCSPVRKPAEVFVRNFDLNMDPDEDMDLISTPTPIPTGSSSKSISEEKVDEYPGWSLSDMEKMAIDPIQLANLNKRIDEDMEDYDEEV 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04565 281 MobiDBLite consensus disorder prediction 147 169 - -
Trre10g04565 281 Coils Coil 263 281 - -
Trre10g04565 281 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Trre10g04565 281 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Trre10g04565 281 MobiDBLite consensus disorder prediction 170 185 - -
Trre10g04565 281 MobiDBLite consensus disorder prediction 90 197 - -
Trre10g04565 281 MobiDBLite consensus disorder prediction 216 243 - -
Trre10g04565 281 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 122 - -
Trre10g04565 281 MobiDBLite consensus disorder prediction 100 125 - -
Trre10g04565 281 SUPERFAMILY Histone-fold 3 105 IPR009072 GO:0046982
Trre10g04565 281 FunFam dr1-associated corepressor homolog 1 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04565 Trre-Chr10 54523281 54526109 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04565 1 270 CCAAT-HAP5 Transcription Factor Family AT3G12480 45.548 1.10e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Trre10g04565 CBFD_NFYB_HMF 3.3e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04565 K21752 - gmx:100814800 394.045