Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04562 ATGTCATTTTCCTTAGCACGACAACACCAAGTTCTTGCTATTTCCTTTTTTGAAGGAAGAATGTCAAGTGGAGCAACGCACTGGTGTTATGAATGCAGTCGGCCAATTGTGCTTGAAGGGAGAGACGTCGTTTGCCCTTACTGTGACGATGGATTTGTACAGGAACTTGATGAGATGCGAGGCATTGCACCTCAAAATACCCTTCCGTCACGCTCAGGAGAGCTCCATCAAATGCCTGATTTATTTGATGCTCTACATGCTTTTGTGGGGAATAGAGGTTCTGAAAACAGGTTTGGGCTTATGGATGCTGTTGATAATTTCATGAGACATAGAATGGCTGGAATGCACCCAAACTTTGATGTTAGAGGGAGGACGAGTTCATCTGTGCCGGTTCCTGAACAGAGTTGGGGTGTTTATAGTTCTGGTCCTTTTTTAGTATTTCATGGCCAAGTTCCTGGATTAAACTTGCCTAATGGAAGCCCGAGAGGTGGTCCAAGGCGTGGTGATTTTGGCGACTACTTTATGGGTTCTGGACTTGAAGAGCTTATTGAACAACTCACCATGAATGATCGGCGTGGTCCACCCCCAGCCGCACGATCTTCAATTGATGCAATGCCTACTATTAGGATCACACAGGCACATCTTCGCTCCGATTCACATTGTCCAGTTTGTAAAGAAAAATTTGAACTTGGTTCTGAAGCCAGAGAGATGCCATGTGATCATATTTACCATTCCGACTGTATTGTTCCTTGGTTGGTTGAGCATAACTCGTGTCCTGTTTGCCGTGTTGAGCTGCCACCACACGGACAAGTTAGTTCTCGTTCAAGTAGTCGAAGCAACAACAGTGGAAATAGTAGCTCAAGGGGCAGGGAGAGTGACCGTCCAAACAATGGAAGGAGAAATCCATTTTCGTTTCTGTGGCCATTCCGTTCTTCAAGTTCAAACAATAATCAATATTCTGAGACTGGAGGAAGCAGCTCTTCAACCAATGCTGACCAGAATAACGGAACAAGTTATCATGGATGGCATTACGATAACTAA 1041 0.4476 MSFSLARQHQVLAISFFEGRMSSGATHWCYECSRPIVLEGRDVVCPYCDDGFVQELDEMRGIAPQNTLPSRSGELHQMPDLFDALHAFVGNRGSENRFGLMDAVDNFMRHRMAGMHPNFDVRGRTSSSVPVPEQSWGVYSSGPFLVFHGQVPGLNLPNGSPRGGPRRGDFGDYFMGSGLEELIEQLTMNDRRGPPPAARSSIDAMPTIRITQAHLRSDSHCPVCKEKFELGSEAREMPCDHIYHSDCIVPWLVEHNSCPVCRVELPPHGQVSSRSSSRSNNSGNSSSRGRESDRPNNGRRNPFSFLWPFRSSSSNNNQYSETGGSSSSTNADQNNGTSYHGWHYDN 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04562 346 SMART ring_2 221 261 IPR001841 -
Trre10g04562 346 Pfam Ring finger domain 220 262 IPR001841 -
Trre10g04562 346 ProSiteProfiles Zinc finger RING-type profile. 221 262 IPR001841 -
Trre10g04562 346 SUPERFAMILY RING/U-box 201 268 - -
Trre10g04562 346 Pfam zinc-ribbon 26 56 IPR039525 GO:0061630
Trre10g04562 346 CDD RING-H2_RNF126-like 221 262 - -
Trre10g04562 346 MobiDBLite consensus disorder prediction 269 291 - -
Trre10g04562 346 MobiDBLite consensus disorder prediction 306 346 - -
Trre10g04562 346 FunFam E3 ubiquitin-protein ligase RING1-like 185 268 - -
Trre10g04562 346 MobiDBLite consensus disorder prediction 267 346 - -
Trre10g04562 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 184 268 IPR013083 -
Trre10g04562 346 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 160 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04562 Trre-Chr10 54490739 54493237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04562 165 266 C3H Transcription Factor Family AT5G01980 46.154 1.68e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04562 K11982 - gmx:100813674 527.709