Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04558 ATGTCATCATCTTCAGAGCAACAAAAAACCAATGATGGTGATCATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATGGATCGTTGAAAAGTGGAAGATGGTCAAAAGAAGAGGATGAAATATTGGTAAATTATGTAAAAGAACATGGAATTAAAAATTGGAATGCAATACAAAAGAAAGCAGTACTTAATCGAGATGGAAAAAGTTGTCGTCTAAGATGGCATAATCACTTAGAACCAGGTGTGAAAAAGGGCAAATTTAGTGAAGAAGAAGTAGAAAAAGTCATTCGGATGCATGAGCTTGGAATCAAAGAATGGTGTAAAATGGCTAAACAGTTGCCTGGAAGATCAGATAATGATATAAAGAATTTTTTTAATTCAAGAGCAAGAAAACTAAATAGAAACCTTAAATTGAGTGGTTCCAGCAGCAAGCAAGTTGATGATGAGATGAATGAAAACAACTACTCTGAACAACTTCCAAAGGTTGTTGATGATTCAAATAAGCAGCTTCCAAAGTTGTCAAAGTTGGTTGATGATTCAAGGATGCTCTACAACAATGTGGAAAGTACTTCTATAAGCAATCATACTACCCCAACATCATGGATTAATAGGGCTAGCATTGGAACTTTTATGCATGATGCCAGGGTACCAAATCCATCTCCATTCTCACCATATTTTGACCAAAATATGGACTATCCACATCCTTCAATTAAACACAATTTGCATAGAAAATATCCATCAAGGTATGATGAGATAATTAAAAACAACTCTAAACAACTTCCAAACTTATTTGATGTTCCAAAGTGGGTTGATGTTTCAAATAAGCACTACAAAAACGTGGGAAGTGCTTCTACAAGCAATCAAACTGCCCCAACAAGGAATAATAGGGTACCATATCAAAATATGAACTATTCACCTCCTTCATTGGAACATAGTTTATATGGAAAATATCCATCAATATCTGATGAGATAAATAAAAACAACTCTGAACAGCTTTCAAACTCATTCCAAGTCCCAAATAAGGAGCTTCCAGAGTTGGTTTGTGATTCAAATATGCTCAACAGTAATGTGGGAAGTATTTCTACAAGCAATCTTACTACCCCAACATGCATTAATAGGTGTGGCAATGGAACTTCTAGTAAGCAATTTACCATGGTGCCAAATCCACTCCCACCATGTTCATACGTTCAAAATATGGACTGTCAACTTCCTCCTTATAAGAAGTTAGGTGAGTATCCTCAAAATCCACTTCCACCACCTATGGAAGCTCAATATCAGATGACAGAATCAGTTTCTCCATATAGAAATTTGGTTGATGAAAAAGGGAAGAAGCCAATTTCTTTTGAGAATGATTTTGGAGCAAATTTCGTTAGCAATTTTACAGATCCATATCTTTGCCATGGCTCAAGATTATTAGACAATGACGGTAACAATAACTTGAATGACAAGCTTCCACGCGATGTAAATGATACCTTAGACGTGGCTATAAATGAGGATGACATAGATTGGGATACTTTGTCTGACTTAGGTTCATTAGACAACGACGATAACAATAACTTGCGTGACAAGATTCCACATGATATAAAGGATACCTTAGACGCGGTTATATATGGAAAAAGCTTCCATCCTAAGTGA 1695 0.3381 MSSSSEQQKTNDGDHNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGSLKSGRWSKEEDEILVNYVKEHGIKNWNAIQKKAVLNRDGKSCRLRWHNHLEPGVKKGKFSEEEVEKVIRMHELGIKEWCKMAKQLPGRSDNDIKNFFNSRARKLNRNLKLSGSSSKQVDDEMNENNYSEQLPKVVDDSNKQLPKLSKLVDDSRMLYNNVESTSISNHTTPTSWINRASIGTFMHDARVPNPSPFSPYFDQNMDYPHPSIKHNLHRKYPSRYDEIIKNNSKQLPNLFDVPKWVDVSNKHYKNVGSASTSNQTAPTRNNRVPYQNMNYSPPSLEHSLYGKYPSISDEINKNNSEQLSNSFQVPNKELPELVCDSNMLNSNVGSISTSNLTTPTCINRCGNGTSSKQFTMVPNPLPPCSYVQNMDCQLPPYKKLGEYPQNPLPPPMEAQYQMTESVSPYRNLVDEKGKKPISFENDFGANFVSNFTDPYLCHGSRLLDNDGNNNLNDKLPRDVNDTLDVAINEDDIDWDTLSDLGSLDNDDNNNLRDKIPHDIKDTLDAVIYGKSFHPK 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04558 564 MobiDBLite consensus disorder prediction 1 52 - -
Trre10g04558 564 Gene3D - 106 181 - -
Trre10g04558 564 SMART sant 103 151 IPR001005 -
Trre10g04558 564 SMART sant 50 100 IPR001005 -
Trre10g04558 564 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 30 381 - -
Trre10g04558 564 Pfam Myb-like DNA-binding domain 54 114 - -
Trre10g04558 564 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 102 IPR017930 -
Trre10g04558 564 SUPERFAMILY Homeodomain-like 49 145 IPR009057 -
Trre10g04558 564 CDD SANT 106 146 IPR001005 -
Trre10g04558 564 MobiDBLite consensus disorder prediction 1 51 - -
Trre10g04558 564 ProSiteProfiles Myb-like domain profile. 99 149 IPR001005 -
Trre10g04558 564 FunFam MYB-related transcription factor 50 103 - -
Trre10g04558 564 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 103 153 IPR017930 -
Trre10g04558 564 CDD SANT 53 98 IPR001005 -
Trre10g04558 564 ProSiteProfiles Myb-like domain profile. 46 98 IPR001005 -
Trre10g04558 564 Gene3D - 51 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04558 Trre-Chr10 54459868 54464054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04558 49 261 MYB Transcription Factor Family AT4G26930 38.117 1.82e-35 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre10g04558 Myb_DNA-bind_6 7.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04558 K09422 - tpra:123922667 394.045