Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04557 ATGGATTGCAAAAAACAAAAGAATAAGTTCGATGATGGTAGGACACATCAGGATACTAGGGCAAATTCTATGAAATCCGTAGAGAAGAAGAAAAGTTTAGCTTCAACTTCTAATTCTTGTAAAGTTAATGATAAACCAAAGGGTAATCATCATCATGAAGGATCAACAAGTACAAAAATTCACAAGTGTGAATTTTGTAACAAAATTTTTAATTGTGGAAAAGCATTAGGTGGTCACAAAAGATTTCATCTTCAACAACTAAGGAAAGAGAATGAAGCTAAAACTAGGGCTAATTTCAATTCTTCTAATAATAATGATGGAAAACAAATATGCAATGTTTGCAAGAAGAATTTTCCATCTAAAAAAGCTTTATATGGTCACATGAGATCTCACCCCGAAAGGGAATGGAGAGGTATTCACCCTAATAGGTATAATTATAGTATTGATTATGATGATGATTATGATAATCATGATCAAGATCAATATTTTATTGGTAAACCTAAAAAATTGGTTATTGATGATGAATCAATATCTTGGCCACCAAGATCGTTTAAAACCAATAAAAGGGGTCGAAGCTATGAAGTTGATAATGCTGCTCAAATTCTCATTCATATGTCTAGGGCTAAAAGTTTATATGAGAAATTTGATTATGAGGAGAAAGTGTTTCCTAGTACTAGTGATCTAGTTGGTGACAATATTGGTGAAACAAATTTGAAGAATGATAGTAACAAAAAAATGAAGATGTTGGTGAAATTGAAGAATCCATGTTTAGCATCCAAAGAGAAGAATCTTAATAGGTATGAATGTGAGATTGGGGAATCAAGTCAATCAAAATCAAGAATTGTTCGAGCTTTTGATTTGAATGAGTGA 870 0.3149 MDCKKQKNKFDDGRTHQDTRANSMKSVEKKKSLASTSNSCKVNDKPKGNHHHEGSTSTKIHKCEFCNKIFNCGKALGGHKRFHLQQLRKENEAKTRANFNSSNNNDGKQICNVCKKNFPSKKALYGHMRSHPEREWRGIHPNRYNYSIDYDDDYDNHDQDQYFIGKPKKLVIDDESISWPPRSFKTNKRGRSYEVDNAAQILIHMSRAKSLYEKFDYEEKVFPSTSDLVGDNIGETNLKNDSNKKMKMLVKLKNPCLASKEKNLNRYECEIGESSQSKSRIVRAFDLNE 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04557 289 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 91 247 - -
Trre10g04557 289 SMART c2h2final6 109 131 IPR013087 -
Trre10g04557 289 SMART c2h2final6 61 83 IPR013087 -
Trre10g04557 289 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Trre10g04557 289 Gene3D Classic Zinc Finger 58 131 - -
Trre10g04557 289 MobiDBLite consensus disorder prediction 1 27 - -
Trre10g04557 289 ProSiteProfiles Zinc finger C2H2 type domain profile. 109 136 IPR013087 -
Trre10g04557 289 MobiDBLite consensus disorder prediction 28 43 - -
Trre10g04557 289 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 88 IPR013087 -
Trre10g04557 289 Pfam C2H2-type zinc finger 110 133 - -
Trre10g04557 289 Pfam C2H2-type zinc finger 61 85 - -
Trre10g04557 289 ProSitePatterns Zinc finger C2H2 type domain signature. 111 131 IPR013087 -
Trre10g04557 289 SUPERFAMILY beta-beta-alpha zinc fingers 59 131 IPR036236 -
Trre10g04557 289 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04557 Trre-Chr10 54456347 54457305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04557 61 141 C2H2 Transcription Factor Family AT2G26940 32.075 1.63e-11 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre10g04557 zf-C2H2_6 0.00017 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04557 - - tpra:123922668 414.846