Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04540 ATGGCATTGCCTCCTAGATCAATGATTTTTCATCTGATCTTATCCATTGGTTATTGTTTCTATCTTGCTAGAGCAATCGATTGTGGTGGAAATCATATTGCAAATACCATTATTGTTGATCAACAAGGAAAAGGAGCATTCAACATGATTCAACCTGCCATTGATTCAATAAAGAATAACAATGATCAATGGATTAAGATTCAAATAAATCCTGGAAGATATGTGGGACGTGTTAATATTCCCAATGACAAACCGTGTATTATTTTAGAAGGATCTAATAGAGGAAATACAATAATTAGTTATGGTGATAGACAAGCAACAACAACATTTGTTTCAATGCCACCTAATGTGATTTTGCGTGGTATTACATTTGAGAACACATTTGGACATAATGGACCAGCACTAGCTGCTGCTATACAAGGTGATAAAACAGCTATATTTAATTGTGGTTTCTTGGGTTATCAAGATACTTTATTTGATGGATATGGACGTCATTATTATAAGAATTGTTATATTCAAGGTGAAGTGGACTTCATTTTTGGTTTTGCCCAATCTTATTATGAGAACTGTGTGATAAACGCAACACAAGATAGTTCTTTATCTCCAGGTTTCATCACAGCCCAATCTAGGAAATTACGAACTGAACGAGGTGGTTTTGTTTTTAGAAGAGGGTTTGTTACTGGGATTGGTAAAGTGAATTTAGGAAGAGCATATGGCCCTTACTCAAGAGTTATATTTTGGGGTACAGACCTTTCTTCTGTAGTACTTCCTGAAGGATGGGATGCTTGGAACTACAAAGGCCATGAAAAAAACTTCATCTATGCGGAAGTTGGTTGTACGGGACCGGGTTCCAATACTCAAGGGCGTGTTCCATGGGAAAAAAAGCCAAATGAAATAAATATATATCATTATTCTTTACAAATTTTCATAAATCAAGATGGATGGCTTAACAACCTACCACCTACATTTGTGTAA 975 0.3549 MALPPRSMIFHLILSIGYCFYLARAIDCGGNHIANTIIVDQQGKGAFNMIQPAIDSIKNNNDQWIKIQINPGRYVGRVNIPNDKPCIILEGSNRGNTIISYGDRQATTTFVSMPPNVILRGITFENTFGHNGPALAAAIQGDKTAIFNCGFLGYQDTLFDGYGRHYYKNCYIQGEVDFIFGFAQSYYENCVINATQDSSLSPGFITAQSRKLRTERGGFVFRRGFVTGIGKVNLGRAYGPYSRVIFWGTDLSSVVLPEGWDAWNYKGHEKNFIYAEVGCTGPGSNTQGRVPWEKKPNEINIYHYSLQIFINQDGWLNNLPPTFV 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04540 324 Gene3D - 30 322 IPR012334 -
Trre10g04540 324 Pfam Pectinesterase 37 311 IPR000070 GO:0030599|GO:0042545
Trre10g04540 324 FunFam Pectinesterase 31 320 - -
Trre10g04540 324 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 34 317 - -
Trre10g04540 324 SUPERFAMILY Pectin lyase-like 33 318 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04540 Trre-Chr10 54345479 54348879 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04540 10 269 Carbohydrate Esterase AT2G19150 44.891 9.11e-67 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04540 - - tpra:123922273 602.053