Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04535 ATGGCCAAGAAACGAAAGCTTCGATCCTCTGACCCCGAACCTACCAAACCAGTCGAACCCGAACCACAACAACAAGAAGTTGCCGAAGAACAACAACAACCCGATGAAGAACCAACCGAAAACATGGCCGTCGATGAACAAATCACTCCAATACAAGAAGGAGAAGAACAACAAGGAGAGGGAGAAGAACAAGAACAAGAAGAAGTAGCAGAAGAAGAGGAAGAAGACGAACAACAACAAGAGGACGAAACCCTAGAAAATCAACAGCAAGATTCTGCCACTGAAGTTCCGAACAACGGTGCCGAGTCGGAGCAGACTGAGACGACGACGGTGGAAGCTAACGGTGCTGGGGAAACGAACAATAACGAGGAAGAAGAGGAAGATCTAGATTTGGAAGAAGAACCTGTTGAGAAGCTTCTAGAGCCTTTCACGAAGGAGCAATTACACGCTCTTGTGAAACAAGCGATTGAGAAGCATCCAGATCTATCGGAGAATGTTCGTCAGCTGGCTGATGTGGACCCCGCTCACCGGAAAATTTTTGTTCATGGCCTTGGATGGGATGCCACCTCTGAAACCTTAATCAGCGTGTTTTCGAAGTATGGTGAAATTGAAGATTGTAAGGCAGTAACTGATAAGGTTTCTGGAAAATCAAAGGGTTATGCTTTTATTTTGTTTAAGCATAGGACCGGTTGTCGCAGGGCGTTGAAACAGCCTCAGAAGCAGATTGGAAATCGGACGACATCGTGTCAGCTGGCTTCTGCCGGACCTGTTCCAGCGCCTCCACCGAATGGGCCACCGGTTTCTGAATACACTCAAAGGAAGATTTTTGTAAGCAATGTGAGTTCTGATATTGATCCTCAGAAACTGCTTGAGTTTTTCAAGCAGTTTGGAGAGGTTGATGATGGTCCTTTGGGTCTCGATAAGGCGACAGGGAGGCCGAAGGGTTTTGCTCTTTTTGTTTACAAGTCTGTTGAGAGTGCTAAGAAGGCTTTGGAAGAGCCAAATAAGACTTTTGAGGGTCATACTCTGTATTGTCAGAAGGCTGTTGATGGTCCTAAGGGATACAAGGGTCATTATCAGCAGCAACAACATCACCAGTCACATCATTCCCACCATCATCATCAGCCTCACTACAATTCCAGGAAAGAAAAGAAGTATTCTCATGGTGGTGGTGGGCCATCACATGGTGGTCACTTGATGGCACCTGCTGGCCCTGCTGCTGGGGGTTACAACAATGCGGGAGTTCAGCCCCAGGGGCCATTGAATCCGGTACTTGGACAGGCGCTATCGGCTTTGCTAGCTAACCAAGGAGCTGGTTTGGGGCTTGGGAATTTGCTTGGAGGCCTGGGTGGTGCACCGGTGAATCAAGCTGGTCCACCTGCTTATGGTAATCAGGCTGCTATGGGATATGGTCAGCCGGGGTTGCAGCCACAATACCAGAATCCTCAGATGGGGCAGACTGGTGGTGTTAGACCCCATCCTGGTTCTGGTGGCGCTCCTTACATGAATCACTAG 1515 0.4845 MAKKRKLRSSDPEPTKPVEPEPQQQEVAEEQQQPDEEPTENMAVDEQITPIQEGEEQQGEGEEQEQEEVAEEEEEDEQQQEDETLENQQQDSATEVPNNGAESEQTETTTVEANGAGETNNNEEEEEDLDLEEEPVEKLLEPFTKEQLHALVKQAIEKHPDLSENVRQLADVDPAHRKIFVHGLGWDATSETLISVFSKYGEIEDCKAVTDKVSGKSKGYAFILFKHRTGCRRALKQPQKQIGNRTTSCQLASAGPVPAPPPNGPPVSEYTQRKIFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGRPKGFALFVYKSVESAKKALEEPNKTFEGHTLYCQKAVDGPKGYKGHYQQQQHHQSHHSHHHHQPHYNSRKEKKYSHGGGGPSHGGHLMAPAGPAAGGYNNAGVQPQGPLNPVLGQALSALLANQGAGLGLGNLLGGLGGAPVNQAGPPAYGNQAAMGYGQPGLQPQYQNPQMGQTGGVRPHPGSGGAPYMNH 504
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04535 504 MobiDBLite consensus disorder prediction 1 133 - -
Trre10g04535 504 Coils Coil 61 91 - -
Trre10g04535 504 MobiDBLite consensus disorder prediction 353 405 - -
Trre10g04535 504 SUPERFAMILY RNA-binding domain, RBD 257 368 IPR035979 GO:0003676
Trre10g04535 504 MobiDBLite consensus disorder prediction 1 15 - -
Trre10g04535 504 MobiDBLite consensus disorder prediction 56 84 - -
Trre10g04535 504 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 39 357 - -
Trre10g04535 504 SMART rrm1_1 274 346 IPR000504 GO:0003723
Trre10g04535 504 SMART rrm1_1 178 250 IPR000504 GO:0003723
Trre10g04535 504 MobiDBLite consensus disorder prediction 85 118 - -
Trre10g04535 504 MobiDBLite consensus disorder prediction 242 269 - -
Trre10g04535 504 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 179 246 IPR000504 GO:0003723
Trre10g04535 504 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 275 343 IPR000504 GO:0003723
Trre10g04535 504 SUPERFAMILY RNA-binding domain, RBD 166 258 IPR035979 GO:0003676
Trre10g04535 504 Gene3D - 169 255 IPR012677 -
Trre10g04535 504 MobiDBLite consensus disorder prediction 481 504 - -
Trre10g04535 504 MobiDBLite consensus disorder prediction 119 133 - -
Trre10g04535 504 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 177 254 IPR000504 GO:0003723
Trre10g04535 504 MobiDBLite consensus disorder prediction 362 381 - -
Trre10g04535 504 Gene3D - 263 398 IPR012677 -
Trre10g04535 504 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 273 350 IPR000504 GO:0003723
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre10g04535 Trre-Chr10 54308630 54310144 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04535 269 352 C2H2 Transcription Factor Family AT2G19380 30.952 3.73e-09 57.4
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04535 K12741 - gmx:100792637 498.819