Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre10g04535 | ATGGCCAAGAAACGAAAGCTTCGATCCTCTGACCCCGAACCTACCAAACCAGTCGAACCCGAACCACAACAACAAGAAGTTGCCGAAGAACAACAACAACCCGATGAAGAACCAACCGAAAACATGGCCGTCGATGAACAAATCACTCCAATACAAGAAGGAGAAGAACAACAAGGAGAGGGAGAAGAACAAGAACAAGAAGAAGTAGCAGAAGAAGAGGAAGAAGACGAACAACAACAAGAGGACGAAACCCTAGAAAATCAACAGCAAGATTCTGCCACTGAAGTTCCGAACAACGGTGCCGAGTCGGAGCAGACTGAGACGACGACGGTGGAAGCTAACGGTGCTGGGGAAACGAACAATAACGAGGAAGAAGAGGAAGATCTAGATTTGGAAGAAGAACCTGTTGAGAAGCTTCTAGAGCCTTTCACGAAGGAGCAATTACACGCTCTTGTGAAACAAGCGATTGAGAAGCATCCAGATCTATCGGAGAATGTTCGTCAGCTGGCTGATGTGGACCCCGCTCACCGGAAAATTTTTGTTCATGGCCTTGGATGGGATGCCACCTCTGAAACCTTAATCAGCGTGTTTTCGAAGTATGGTGAAATTGAAGATTGTAAGGCAGTAACTGATAAGGTTTCTGGAAAATCAAAGGGTTATGCTTTTATTTTGTTTAAGCATAGGACCGGTTGTCGCAGGGCGTTGAAACAGCCTCAGAAGCAGATTGGAAATCGGACGACATCGTGTCAGCTGGCTTCTGCCGGACCTGTTCCAGCGCCTCCACCGAATGGGCCACCGGTTTCTGAATACACTCAAAGGAAGATTTTTGTAAGCAATGTGAGTTCTGATATTGATCCTCAGAAACTGCTTGAGTTTTTCAAGCAGTTTGGAGAGGTTGATGATGGTCCTTTGGGTCTCGATAAGGCGACAGGGAGGCCGAAGGGTTTTGCTCTTTTTGTTTACAAGTCTGTTGAGAGTGCTAAGAAGGCTTTGGAAGAGCCAAATAAGACTTTTGAGGGTCATACTCTGTATTGTCAGAAGGCTGTTGATGGTCCTAAGGGATACAAGGGTCATTATCAGCAGCAACAACATCACCAGTCACATCATTCCCACCATCATCATCAGCCTCACTACAATTCCAGGAAAGAAAAGAAGTATTCTCATGGTGGTGGTGGGCCATCACATGGTGGTCACTTGATGGCACCTGCTGGCCCTGCTGCTGGGGGTTACAACAATGCGGGAGTTCAGCCCCAGGGGCCATTGAATCCGGTACTTGGACAGGCGCTATCGGCTTTGCTAGCTAACCAAGGAGCTGGTTTGGGGCTTGGGAATTTGCTTGGAGGCCTGGGTGGTGCACCGGTGAATCAAGCTGGTCCACCTGCTTATGGTAATCAGGCTGCTATGGGATATGGTCAGCCGGGGTTGCAGCCACAATACCAGAATCCTCAGATGGGGCAGACTGGTGGTGTTAGACCCCATCCTGGTTCTGGTGGCGCTCCTTACATGAATCACTAG | 1515 | 0.4845 | MAKKRKLRSSDPEPTKPVEPEPQQQEVAEEQQQPDEEPTENMAVDEQITPIQEGEEQQGEGEEQEQEEVAEEEEEDEQQQEDETLENQQQDSATEVPNNGAESEQTETTTVEANGAGETNNNEEEEEDLDLEEEPVEKLLEPFTKEQLHALVKQAIEKHPDLSENVRQLADVDPAHRKIFVHGLGWDATSETLISVFSKYGEIEDCKAVTDKVSGKSKGYAFILFKHRTGCRRALKQPQKQIGNRTTSCQLASAGPVPAPPPNGPPVSEYTQRKIFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGRPKGFALFVYKSVESAKKALEEPNKTFEGHTLYCQKAVDGPKGYKGHYQQQQHHQSHHSHHHHQPHYNSRKEKKYSHGGGGPSHGGHLMAPAGPAAGGYNNAGVQPQGPLNPVLGQALSALLANQGAGLGLGNLLGGLGGAPVNQAGPPAYGNQAAMGYGQPGLQPQYQNPQMGQTGGVRPHPGSGGAPYMNH | 504 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre10g04535 | 504 | MobiDBLite | consensus disorder prediction | 1 | 133 | - | - | |
Trre10g04535 | 504 | Coils | Coil | 61 | 91 | - | - | |
Trre10g04535 | 504 | MobiDBLite | consensus disorder prediction | 353 | 405 | - | - | |
Trre10g04535 | 504 | SUPERFAMILY | RNA-binding domain, RBD | 257 | 368 | IPR035979 | GO:0003676 | |
Trre10g04535 | 504 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Trre10g04535 | 504 | MobiDBLite | consensus disorder prediction | 56 | 84 | - | - | |
Trre10g04535 | 504 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G | 39 | 357 | - | - | |
Trre10g04535 | 504 | SMART | rrm1_1 | 274 | 346 | IPR000504 | GO:0003723 | |
Trre10g04535 | 504 | SMART | rrm1_1 | 178 | 250 | IPR000504 | GO:0003723 | |
Trre10g04535 | 504 | MobiDBLite | consensus disorder prediction | 85 | 118 | - | - | |
Trre10g04535 | 504 | MobiDBLite | consensus disorder prediction | 242 | 269 | - | - | |
Trre10g04535 | 504 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 179 | 246 | IPR000504 | GO:0003723 | |
Trre10g04535 | 504 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 275 | 343 | IPR000504 | GO:0003723 | |
Trre10g04535 | 504 | SUPERFAMILY | RNA-binding domain, RBD | 166 | 258 | IPR035979 | GO:0003676 | |
Trre10g04535 | 504 | Gene3D | - | 169 | 255 | IPR012677 | - | |
Trre10g04535 | 504 | MobiDBLite | consensus disorder prediction | 481 | 504 | - | - | |
Trre10g04535 | 504 | MobiDBLite | consensus disorder prediction | 119 | 133 | - | - | |
Trre10g04535 | 504 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 177 | 254 | IPR000504 | GO:0003723 | |
Trre10g04535 | 504 | MobiDBLite | consensus disorder prediction | 362 | 381 | - | - | |
Trre10g04535 | 504 | Gene3D | - | 263 | 398 | IPR012677 | - | |
Trre10g04535 | 504 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 273 | 350 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre10g04535 | Trre-Chr10 | 54308630 | 54310144 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre10g04535 | 269 | 352 | C2H2 Transcription Factor Family | AT2G19380 | 30.952 | 3.73e-09 | 57.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre10g04535 | K12741 | - | gmx:100792637 | 498.819 |