Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04530 ATGGGTTCCCAGGAGGGTGAAGACTGTTTGCCCCCACCACCTCCCATCGTTCCTTCTGATGTTGAACCAATTAAAATTGTTGAACCATATGAGCATGTCAAAAGGAAGCTTCCTACCAAGGTTCCAATGGCTAGGCGTGGCCTAGGCTCAAAGGGAACTAAACTTCCTTTACTGACCAATCATTTTAAAGTTAATGTTGAAAACACTGATGGACACTTCTTCCAGTACAGTGTGGCTTTATTTTATGAAGATGGACGCCCTGTTGAAGGCAAAGGTTCTGGTAGGAAGATACTTGACAGAGTTCAAGAGACCTATAATTCTGAGCTGAATGGAAAGGACATTGCCTATGATGGAGAAAAAACTCTGTTCACTATTGGCTCTTTAGCCCAGAACAAGCTTGAGTTTAAAGTTGTTCTTGATGATGTTGTTTCAAACAGGAACAATGGAAACTGCAGTCCTGAAGCGAATGGAAGTCCTAATGAAGCTGATAGGAAGAGGGTTAAGAAATCCTACAGATCAAAGAGTTATAAAGTTGAGATCAGCTTTGCTTCCAAGATTCCACTGCAGGCTATTGCCAATGCTTTGAAGGGGCATGAAACAGAGAATTATCAAGAAGCCATCAGGGTTCTTGATATTATCTTGAGGCAACATGCTGCCAAACAAGGCTGTCTGCTTGTGCGCCAAAATTTTTTCCACAACGATCCTAAAAATTTCTCTGATGTTGGCGGCGGTGTACTTGGATGCAGAGGGCTGCATTCCAGCTTTAGGACGACCCAGAGTGGGTTGTCTCTAAATATAGATGTGTCCACAACTATGATTGTCCGTCCTGGACCTGTTGTTGATTTCTTAATTGCAAATCAGAATGTTAGGGACCCCTTCAGCCTTGACTGGAACAAGGCCAAAAGGACTCTAAAGAATTTGAGGGTCACAGCCAGCCCATCCAATCAAGAGTACAAGATTACTGGGCTGAGTGAACTACCTTGCAAGGACCAGCTGTTTACACTGAAGAAGAGAGGTGCTGGTGAGGATGAATCTGAAGAGATCACAGTTTACGATTATTTTGTTAACCGCCGAAAGATTCCTTTGCAGTACTCTGCTGACCTTCCATGTATCAATGTTGGAAAGCCTAAGCGCCCTACATATGTCCCAATTGAGCTCTGCTCATTGGTATCCCTTCAACGGTATACCAAAGCCCTTTCCACTCTTCAAAGGTCATCCCTTGTGGAAAAGTCAAGGCAGAAGCCTAAAGAGCGGATGCAGGTCTTGACAGATGCTTTGAGAACTAGCAACTATGGCTCTGAGCCAATGCTACGTAACTGCGGCATTTCAATCACCTCTGGGTTCACACAAGTTGATGGGAGGGTTTTGCAGGCTCCAAGGTTGAAGTTTGGCAATGGAGAAGATTTCAGTCCCAGAAATGGGAGATGGAATTTTAATAACAAGAGAATTGTGCAACCTGTTAAAATTGAAAAATGGGCTGTGGTGAACTTTTCTACTCGTTGTGATGTGCGTGGACTTGTAAGAGATTTGATCAAATGTGGAGGAATGAAAGGAATTGCTGTGGAACAACCATTTGATGTATTTGACGAAAATGGTCAGTTTAGGCGTGCACCACCATTGGTAAGAGTTGAGAAAATGTTTGAGTTTGCTCAGTCCAAACTTCCAGGTGCTCCTAAGTTTCTTCTTTGTCTGCTTCCGGAGAGGAAGAACTCTGATCTTTATGGTCCATGGAAGAAGAAATGTCTTGCTGATTTCGGAATTGTTACTCAGTGCATCGCTCCAACCAGGGTAAACGACCAGTATCTGACAAATGTTTTGCTGAAGATAAACGCTAAGCTTGGTGGAATGAATTCTCTGTTGGGTGTTGAACATAATCCCTCCATCCCTATTGTATCTAAAGCCCCCACTCTCATTTTGGGCATGGATGTTTCTCATGGTTCACCTGGGCAAACTGACATTCCTTCAATTGCTGCGGTTGTAAGCTCGAGGCAATGGCCAATGATATCTAAATATAGGGCATGTGTCCGAACTCAGGGTGCAAAGGTGGAAATGATAGACAATTTGTTCAAGCCAGTGTCTGATGATGTTGATGAAGGAATTATAAGGGAGCTGTTGATTGATTTCTATTCAAGTTCTGGGAACCGAAAACCAGACAACATCATCATTTTCAGGGATGGTGTCAGTGAGTCCCAGTTTAACCAAGTGTTGAACATTGAACTGAGCCAAATCATTGAGGCCTGTAAATTTCTGGATGAAAGCTGGAACCCCAAATTTTTGGTGATTGTTGCACAGAAGAATCATCACACAAAATTCTTCCAGCCTGGATCCCCAGACAATGTGCCTCCTGGAACTGTTGTTGACAACAAAATTTGTCATCCTAGAAATTATGATTTCTATCTGTGTGCTCATGCAGGAATGATTGGCACAAGCAGGCCAACACATTATCATGTTCTTTTGGATGAGATTGGCTTTTCTCCAGATGATTTACAGGAGCTTGTGCACTCACTTTCTTATGTGTATCAGCGGAGCACCACTGCAATTTCTGTTGTTGCTCCAATCTGCTATGCGCACTTGGCTGCTTCCCAGGTTGGACAGTTCATGAAGTTTGAGGATAAGTCTGAAACCAACTCTAGCCATGGAGGTAGCCATGGTGGTATCAATGGCTCCCCTGTCCCTCAGTTGCCCAAGTTGAATGAGGGTGTCTGCAATTCTATGTTTTTTGTTTGA 2727 0.4342 MGSQEGEDCLPPPPPIVPSDVEPIKIVEPYEHVKRKLPTKVPMARRGLGSKGTKLPLLTNHFKVNVENTDGHFFQYSVALFYEDGRPVEGKGSGRKILDRVQETYNSELNGKDIAYDGEKTLFTIGSLAQNKLEFKVVLDDVVSNRNNGNCSPEANGSPNEADRKRVKKSYRSKSYKVEISFASKIPLQAIANALKGHETENYQEAIRVLDIILRQHAAKQGCLLVRQNFFHNDPKNFSDVGGGVLGCRGLHSSFRTTQSGLSLNIDVSTTMIVRPGPVVDFLIANQNVRDPFSLDWNKAKRTLKNLRVTASPSNQEYKITGLSELPCKDQLFTLKKRGAGEDESEEITVYDYFVNRRKIPLQYSADLPCINVGKPKRPTYVPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPKERMQVLTDALRTSNYGSEPMLRNCGISITSGFTQVDGRVLQAPRLKFGNGEDFSPRNGRWNFNNKRIVQPVKIEKWAVVNFSTRCDVRGLVRDLIKCGGMKGIAVEQPFDVFDENGQFRRAPPLVRVEKMFEFAQSKLPGAPKFLLCLLPERKNSDLYGPWKKKCLADFGIVTQCIAPTRVNDQYLTNVLLKINAKLGGMNSLLGVEHNPSIPIVSKAPTLILGMDVSHGSPGQTDIPSIAAVVSSRQWPMISKYRACVRTQGAKVEMIDNLFKPVSDDVDEGIIRELLIDFYSSSGNRKPDNIIIFRDGVSESQFNQVLNIELSQIIEACKFLDESWNPKFLVIVAQKNHHTKFFQPGSPDNVPPGTVVDNKICHPRNYDFYLCAHAGMIGTSRPTHYHVLLDEIGFSPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGQFMKFEDKSETNSSHGGSHGGINGSPVPQLPKLNEGVCNSMFFV 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04530 908 Pfam Piwi domain 561 868 IPR003165 GO:0003676
Trre10g04530 908 Pfam Argonaute linker 1 domain 226 274 IPR014811 -
Trre10g04530 908 SMART Piwi_a_2 560 868 IPR003165 GO:0003676
Trre10g04530 908 FunFam Protein argonaute 7 271 395 - -
Trre10g04530 908 CDD PAZ_argonaute_like 276 390 - -
Trre10g04530 908 FunFam Protein argonaute 3 628 908 - -
Trre10g04530 908 Pfam PAZ domain 280 407 IPR003100 GO:0005515
Trre10g04530 908 Gene3D - 455 621 - -
Trre10g04530 908 ProSiteProfiles PAZ domain profile. 301 391 IPR003100 GO:0005515
Trre10g04530 908 Gene3D paz domain 270 395 - -
Trre10g04530 908 Pfam Mid domain of argonaute 470 503 IPR032473 -
Trre10g04530 908 CDD Piwi_ago-like 435 860 IPR045246 -
Trre10g04530 908 Pfam Argonaute linker 2 domain 417 463 IPR032472 -
Trre10g04530 908 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 40 870 - -
Trre10g04530 908 SUPERFAMILY PAZ domain 271 431 IPR036085 GO:0005515
Trre10g04530 908 ProSiteProfiles Piwi domain profile. 560 868 IPR003165 GO:0003676
Trre10g04530 908 Pfam N-terminal domain of argonaute 54 214 IPR032474 -
Trre10g04530 908 SUPERFAMILY Ribonuclease H-like 545 866 IPR012337 -
Trre10g04530 908 SMART DUF1785_2 224 276 IPR014811 -
Trre10g04530 908 Gene3D - 627 908 IPR036397 GO:0003676
Trre10g04530 908 MobiDBLite consensus disorder prediction 871 892 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04530 Trre-Chr10 54257887 54263961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04530 45 907 Eukaryotic Initiation Factors Gene Family AT5G43810 34.845 3.00e-158 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04530 K11593 - gmx:100779439 1545.41