Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04515 ATGGAAGATCAACTAGTAAAAACAAGTGAAAATCAACAAAAACAACCCATAAGATGTAAAGCTGCGGTTTGTCGCAAACCAGGTGAACCATTGATAATTGAGGAAATATTTGTTGCTCCACCAATGCCACATGAAGCTAGGATTCGTATTATATGCACCTCTCTATGTCATAGCGATATTATTTTTTGGAACATGCAGGGTCCTCCTGCAATTTTTCCAAGGATTCTGGGTCATGAAGCGATTGGGGTTGTGGAAAGTGTTGGAGAGGATGTAACAGAACTTAAAAAAGGAGACACTGTTATCCCAATCTTCATGGCGGATTGTGAAGAATGTATAGATTGCAAATCAACAAAAAGCAACCTTTGTTCAAAGTTTCCTTTCGAGGTTTCACCTTCGATGCTTAGATATGATACCAGTAGATTCACCGATCTAAACGGAGAGATCATACACCATTTCATCTTTGTCTCTAGTTTTAGTGAGTACACTGTGGTTGACATTGCCAATCTACTCAAGATTGATCCCGCAATTCCTCCCAATAGGGCTTGTCTCCTCAGTTGTGGTGTATCAACAGGGGTAGGTGCTGCTTGGAAAACAGCAAATGTGGAACCAGGGTCTACAGTAGCTATTTTTGGACTGGGATGTATTGGATTAGCAGTTGCTGAGGGAGCTAGACTTTGTGGAGCAACTAGGATTATTGGTGTGGATATCAAGCCAGAAAAATTTGAAATTGGAAAGAAGTTTGGAATCACAGAATTTGTGCATGCTGGAGAAAGTGAAAACAAATCTGTGAGCCAGATTATCATGGAGATGACAGGTGGGGGAGCAGATTATTGCTTTGAATGTGTTGGTATGGCATCATTGGTGCATGAAGCATATGCTTCATGTAGAAAGGGTTGGGGAAAAACAATTATGTTAGGAGTGGACAAGCCAGGATCTAAGGTTAGCATCAATAGTAGTGATATTCTTTTTCAAGGGAAGAGTCTCATGGGATCCATATTTGGAGGACTCAAACCCAAAACTGATGTACCAATTCTTTTTAAACGTTACATGGACAAGGAACTAAATTTGGATGACTTTGTCACACATGAGGTGCAGTTTAAAGACATCAACAAAGCTTTCGATTTATTGGTTAAAGGAGAGTGTCTTCGATGTGTCATTTGGATGGACAAATGA 1173 0.4007 MEDQLVKTSENQQKQPIRCKAAVCRKPGEPLIIEEIFVAPPMPHEARIRIICTSLCHSDIIFWNMQGPPAIFPRILGHEAIGVVESVGEDVTELKKGDTVIPIFMADCEECIDCKSTKSNLCSKFPFEVSPSMLRYDTSRFTDLNGEIIHHFIFVSSFSEYTVVDIANLLKIDPAIPPNRACLLSCGVSTGVGAAWKTANVEPGSTVAIFGLGCIGLAVAEGARLCGATRIIGVDIKPEKFEIGKKFGITEFVHAGESENKSVSQIIMEMTGGGADYCFECVGMASLVHEAYASCRKGWGKTIMLGVDKPGSKVSINSSDILFQGKSLMGSIFGGLKPKTDVPILFKRYMDKELNLDDFVTHEVQFKDINKAFDLLVKGECLRCVIWMDK 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04515 390 SUPERFAMILY GroES-like 339 387 IPR011032 -
Trre10g04515 390 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 77 91 IPR002328 GO:0008270|GO:0016491
Trre10g04515 390 PANTHER ALCOHOL DEHYDROGENASE 15 386 - -
Trre10g04515 390 FunFam Alcohol dehydrogenase 6 22 203 - -
Trre10g04515 390 Gene3D - 191 331 - -
Trre10g04515 390 Pfam Zinc-binding dehydrogenase 215 335 IPR013149 -
Trre10g04515 390 SUPERFAMILY GroES-like 13 199 IPR011032 -
Trre10g04515 390 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 176 351 IPR036291 -
Trre10g04515 390 Gene3D - 22 383 - -
Trre10g04515 390 Pfam Alcohol dehydrogenase GroES-like domain 43 171 IPR013154 -
Trre10g04515 390 FunFam S-(hydroxymethyl)glutathione dehydrogenase 191 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04515 Trre-Chr10 54062439 54065281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04515 45 189 Monolignol Biosynthesis Gene Families AT4G37970 28.188 1.96e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04515 K00121 - gmx:100806887 664.455