Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04511 ATGCTTCAAGAGAAAGTTAAGGCATTGAATGGAGCAAGACTAGAGGCAAATATTAGAGTGTATGGAGATGAAAAACACAAAAAGAAATGGCCAAGCATTTATTCAGTTGCTTCTGGATTGTTACTTGCACTTTCATTTCTGAAATTTGTGTATCCACCTTTGAAATATCTTGCTCTTGGAGCTGTTGCTGCCGGTGCCGTTCCGATCATCTTGAAAGCTATTGTGTCCATTCGGAACGTTAGATTTGACATTAACATTCTTGTTATCATAGCAGTTATTGGGACAATTGCTATGGAAGATTATTTGGAAGCTGGCACCATTGTTTTCCTCTTCTCAATTGCAGAATGGTTAGAGTCAAGGGCTAGCCACAAGGCAAACGCTGTGATGTCGTCGTTGATGAGCATTGCTCCGCAAAAAGCAACAATGGCTGAAACAGGAGAGGTTGTAGATGTTGATCAGGTGAAACTAAACACAATATTAGCAGTTAAAGCAGGAGAGGTTATACCTATTGATGGAGTTGTTTCCGATGGTAACTGCGAAGTTGATGAGAAAACTTTGACTGGGGAATCATTCCCTGTATCCAAACAGAAAGACTCTACTGTATGGGCTGGCACAATAAATTTAAACGGTTATATTAGTGTGAAGACTACTGCATTAGCTGAAGATTGTGTGGTGGCTAAAATGGCAAAATTAGTGGAAGATGCTCAAAACAGCAAAACCAGTACTCAGAGATTGATAGACAAGTTTGCCAAATTTTATACTCCAGCTGTTGTAGTGATATCAACTCTTGTAGCAGTGGTTCCAATTGTGTTAAAAGTACATAATGAAAAATACTGGCTTCACTTTGCACTGGTTGTTTTAGTAAGTGCATGTCCATGTGCACTTGTACTTTCAACGCCAGTTGCGACTTTTTGTGCTTATACAAAAGCAGCTACATCTGGTCTTCTCATCAAAGGGGGTGATTCTCTTCAAACACTGTCAAAAATTAAAATAATGGCTTTTGACAAAACTGGTACCATAACAAAGGGTGAATTTGTGGTCACAAATTTTCAATCTCTTTCGGATGATATTGATTCGAACACATTAATTTACTGGGCGTCGAGCATTGAGAGCAAGTCAAGCCATCCATTGGCAGAAGCAATTGTTGACCATGGAAGGTCTCTCTCCATTGAACCAAATCCAGAAAAGGTGACAGATTTCGAAAATTTTCCTGGAGAAGGAATCTGGTCAGAAACAGTTGTTTCGAGCTTAGAAGGCGAAGTTGATGGAGGAAAGACTATTGGCTACATATACTCAGGATCAACCCCAGTTGGAATTTTCTCTCTATCTGATGCTTGTCGATCAGGGGTTCAGGAGGCAATAAGGCAGCTAAAGTTGATGGGAATCAAAACCGCAATGCTCACCGGAGATTGCCCATCAGCTGCAATTCAAGCACAGGAACAGTTAGGTAATGCCCTGGAGGTAGTCCATGCAGAACTTTTACCCGAAGGCAAGGTAAAAATAATCTCAGAATTTAAAAGGGAAGGCCCAACAGCCATGATAGGAGATGGTATCAATGATGCGCCGGCATTAGCTTTGGCTGATATCGGAATATCAATGAGAATTTCAGGTTCGGCATTAGCAACTGAAACTGGGGACATCATTCTTATGTCGAATGACCTAAGAAAAATCCCAGAAGTAATCAAGCTTGCAAGAGAATCCCGAAGGAAGGTGATAGAGAACATTATATTGTCCGTGATTACCAAGGTTGCAATCCTCGCCTTGGCAATTGCTGGTCACCCAATTGTTTGGGCAGCAGTTCTTGCTGATGTTGGAACATGTCTGTTGGTCATCTTAAACAGCATGTTACTTTTGCGAAAAAGACGCAAACATGGAGGGCAAAATTGTAAATCGTCAACTCATCATATCCACAAAGTTGGATGTGCTGACACCAACTGTGGATCCTCTCATCAACATCAGCATCCGCATCCGCATCAACATCAACATCAACATCAGCATCCGCATCAACATCAACATCATAGCCATAAGAAGCATTGTTGCTCAGAAAAGGCTGAGCCCAAGATGTGTGCCTCAAACCAACAATTTACTAAGCATTGCCACTCAAACCATGGTCGTGAAAATATGCACGACCATGGAACCATTCATGACATTCACCATAAAAAATCAGGCTGTCATTCTGATTTTAAAGAGCATGAGACAGATGAAATATCCATCGACATCATAACCGAGCACATTGGATCATCCTCGAAGCATGGCTGTTCAAGTTTGGCAGAGAAAGAAAAAGTTTCCTGTAAAGACTGCTCCAAACCATGTGAGATTTTGCCTGTTGAGTGTGGTGCCTGTGAGGTTTTGAATGAGAAAGAAGTTAGTTCATGTTGCAAGAATGAGTCTTCTTCAATTATGCATGCTTGA 2412 0.4113 MLQEKVKALNGARLEANIRVYGDEKHKKKWPSIYSVASGLLLALSFLKFVYPPLKYLALGAVAAGAVPIILKAIVSIRNVRFDINILVIIAVIGTIAMEDYLEAGTIVFLFSIAEWLESRASHKANAVMSSLMSIAPQKATMAETGEVVDVDQVKLNTILAVKAGEVIPIDGVVSDGNCEVDEKTLTGESFPVSKQKDSTVWAGTINLNGYISVKTTALAEDCVVAKMAKLVEDAQNSKTSTQRLIDKFAKFYTPAVVVISTLVAVVPIVLKVHNEKYWLHFALVVLVSACPCALVLSTPVATFCAYTKAATSGLLIKGGDSLQTLSKIKIMAFDKTGTITKGEFVVTNFQSLSDDIDSNTLIYWASSIESKSSHPLAEAIVDHGRSLSIEPNPEKVTDFENFPGEGIWSETVVSSLEGEVDGGKTIGYIYSGSTPVGIFSLSDACRSGVQEAIRQLKLMGIKTAMLTGDCPSAAIQAQEQLGNALEVVHAELLPEGKVKIISEFKREGPTAMIGDGINDAPALALADIGISMRISGSALATETGDIILMSNDLRKIPEVIKLARESRRKVIENIILSVITKVAILALAIAGHPIVWAAVLADVGTCLLVILNSMLLLRKRRKHGGQNCKSSTHHIHKVGCADTNCGSSHQHQHPHPHQHQHQHQHPHQHQHHSHKKHCCSEKAEPKMCASNQQFTKHCHSNHGRENMHDHGTIHDIHHKKSGCHSDFKEHETDEISIDIITEHIGSSSKHGCSSLAEKEKVSCKDCSKPCEILPVECGACEVLNEKEVSSCCKNESSSIMHA 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04511 803 MobiDBLite consensus disorder prediction 653 677 - -
Trre10g04511 803 Pfam E1-E2 ATPase 139 311 - -
Trre10g04511 803 SUPERFAMILY Calcium ATPase, transduction domain A 147 232 IPR008250 -
Trre10g04511 803 NCBIfam heavy metal translocating P-type ATPase 84 617 IPR027256 GO:0006812|GO:0016020|GO:0019829
Trre10g04511 803 NCBIfam HAD-IC family P-type ATPase 107 592 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre10g04511 803 NCBIfam cadmium family heavy metal-translocating P-type ATPase 84 619 - -
Trre10g04511 803 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 4 620 - -
Trre10g04511 803 SUPERFAMILY HAD-like 333 615 IPR036412 -
Trre10g04511 803 Gene3D - 340 421 IPR023299 GO:0000166
Trre10g04511 803 MobiDBLite consensus disorder prediction 646 677 - -
Trre10g04511 803 FunFam Copper-transporting ATPase 1, putative 122 236 - -
Trre10g04511 803 Gene3D - 122 236 - -
Trre10g04511 803 CDD P-type_ATPase_HM 36 616 - -
Trre10g04511 803 PRINTS P-type cation-transporting ATPase superfamily signature 182 196 - -
Trre10g04511 803 PRINTS P-type cation-transporting ATPase superfamily signature 514 533 - -
Trre10g04511 803 PRINTS P-type cation-transporting ATPase superfamily signature 333 347 - -
Trre10g04511 803 PRINTS P-type cation-transporting ATPase superfamily signature 460 470 - -
Trre10g04511 803 PRINTS P-type cation-transporting ATPase superfamily signature 438 449 - -
Trre10g04511 803 PRINTS P-type cation-transporting ATPase superfamily signature 538 550 - -
Trre10g04511 803 SUPERFAMILY Calcium ATPase, transmembrane domain M 84 327 IPR023298 -
Trre10g04511 803 PRINTS H+-transporting ATPase (proton pump) signature 546 571 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre10g04511 803 PRINTS H+-transporting ATPase (proton pump) signature 514 530 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre10g04511 803 Pfam haloacid dehalogenase-like hydrolase 329 528 - -
Trre10g04511 803 ProSitePatterns E1-E2 ATPases phosphorylation site. 335 341 IPR018303 -
Trre10g04511 803 Gene3D - 301 571 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04511 Trre-Chr10 54045524 54051967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04511 6 724 Primary Pumps ATPases AT4G30110 57.827 0.0 885
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04511 K01534 - gmx:100817567 1021.54