Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04495 ATGCGTCCACCGATGAAGAAAATTGATTACAAAGTTGGAGATAAAGTTGAAGTATGCAGCAAAGAAGAAGGATTTATAGGTTCATATTTTGAAGCCACAATTATTTCATGTCTTGATAATGGAAGATATGTGATTCGTTACAAGAATCTTCTTAAAGATGACGAGTCTGAATTTCTCACTGAAACACTTCTTCCAAAGGATTTTCGTCCATCGCCACCACGTATTCGTAATCCTTCTAAATTCCAATTCAATCAAAAAGTGGATGTTTTTGATAACGACGGTTGGTGGGTAGGGAAAATCAAAAGCGAGAAGGTTCTCATGGAAAAAGGTTATTGCTATATTGTGTATTTTGACTATACTGATCAAAGCATTTACTACCCTTGTGATCAAATTAGGGTTCATCATGAGTTGATGTTTAGTGGAGAGTGGATGATGGAAGCTTAA 444 0.3581 MRPPMKKIDYKVGDKVEVCSKEEGFIGSYFEATIISCLDNGRYVIRYKNLLKDDESEFLTETLLPKDFRPSPPRIRNPSKFQFNQKVDVFDNDGWWVGKIKSEKVLMEKGYCYIVYFDYTDQSIYYPCDQIRVHHELMFSGEWMMEA 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04495 147 CDD Tudor_Agenet_AtDUF_rpt1_3 10 73 - -
Trre10g04495 147 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 9 137 - -
Trre10g04495 147 Pfam Agenet domain 13 73 IPR008395 -
Trre10g04495 147 SMART agenet_At_2 79 139 IPR014002 -
Trre10g04495 147 SMART agenet_At_2 8 76 IPR014002 -
Trre10g04495 147 Gene3D - 4 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04495 Trre-Chr10 53958961 53959404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04495 20 98 PHD Transcription Factor Family AT5G58610 33.673 1.50e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04495 - - tpra:123923978 211.846