Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04481 ATGACCAAAACTAGCTGTAGCAGTAGAATTATCAAACTCTTGTTGATTATATCCTTCTTGCATGTTGGTTATGCTCTTACATCTGATGGTTTGACTCTTTTGTCACTCTTGAGAAAGTGGACTTTTGTTCCTCTTCTCATCAATTCTACCTGGAATGCTTCTGATTCCAATCCATGTTCATGGGTTGGTGTTCAATGTGACCCTACTCATAATGTCATTTCCCTTAATCTCACCAGTCATGGGATTTTGGGTCAACTTGGATCTGAAATCGGAAACCTTTATCATTTGCAGACCCTTATGTTGTTAGGTAATGGTTTCTCAGGAAAAGTCCCTTTAGAGTTAAGTAACTGTAGTTTGCTTCAGTATTTAGACCTTGAAGGTAACAGATTCAGTGGAAATATACCATATAGTTTGAAAAGCTTGCAAAATTTACAGTTCATGAGATTGTCTTCCAATATGCTGAGTGGCGAAATTCCGGATTCTTTGTTTGAAATTCCTTCCCTTAATGAAGTGAGCCTGCATAGTAATCTTCTTAGTGGTCCTATTCCAACCAATATTGGAAACTTGACAAATCTGTTAAGATTGTATCTATATGGTAATCAGTTTTCAGGGACTATTCCTTCATCCATTGGTAATTGCAGTAAACTAGAGGACCTTGAATTGTCTTTCAACCGATTGAGTGGTGAAATTCCGAACAGTGTTTGGAGAATTCCAAGTCTTGTGAACATATTGGTTCACAACAACAGCCTCTCTGGGGAGCTACCTTTCGAGATGACAAATCTCAAGTATCTAAGAAATATCTCATTGTTTGATAATCAGTTCTCAGGAGTCATACCGCAAAGTTTAGGAATCAACAGCAGCATAGTAAAGTTGGACTGTATGAATAACAAGTTCGGTGGTACTATCCCGCCAAATCTTTGCTTTGGAAAGAATTTGCGTGAACTCAATATGGGAATCAATCAATTTCAAGGTGGTGTACCTTCTGATGTAGGAAGATGTGCAACTCTGGTGAGGTTGTTTCTCAATGATAATAATTTCACCGGATCTCTTCCTTATTTTGAAAGTAATCTGAACCTGAAATACATGGACATGAGCAAGAACAATATCAGTGGACCGATTCCATCAAGTTTGGGAAATAGTTCAAATCTCACGTACATTAATTTGTCGAGGAACAAATTTGCAGGACCTATACCATCAGAGCTTGGAAACCTTGTGAATCTTGTGATTTTGGATCTTTCTCATAATAACTTGCAAGGTTCTTTGCCACTTCGGCTGTCAAATTGTACTAAATTGGATCGTTTTGATGTGGGATTCAATTTCCTAAATGGCTCATTCCCTTCAAGTTTGAGAAGTTGGACAAACATAACCACATTGATTTTAAGAGAAAATCACTTCACGGGAGGTATACCAGGGTTTTTGGCAGAACTTAGCAACCTTCGCGAGTTACAACTTGGTGGAAATTTGTTTGGAGGAAAAATTCCTCGATCGATGGGAAAATTGCTTAATTTGTTCTATGGATTGAATCTGAGTGCTAATGGATTGATAGGTGACGTTCCTTCAGAAATCGGGAAGCTTGGACTACTTCAAAGTCTGGATATATCGTTGAACAATTTATCCGGAAGCATAGATGCTCTTGAAGATCTTGTTTCATTAATTGAAGTCAATATTTCTTACAATCTCTTCAATGGTTCTGTACCAAAAGTTCTAATGAAGTTATTGTATTCCTCACCATCTTCATTCATGGGGAATCCTCTCCTATGCGTCAGTTGTTTGAGTTGCATTAACACTAGTTATATAAATTCATGTGTTCACAAATCAACTGATCACAAAGGTATCAGTAATGTTCAAATTGTGATGATAGAACTTGGATCCTCAATATTGATTTCTGCTGTTCTGGTAATGATAATTAAAAGGCATTTCCATAGAAAGAATTCAGATACGAAAGATCTAAAGCATTGGTATTATTATGGTAGAGGAGCTGGAATGATTGGAGTCAGATATGCTCACGAATCGAACATCTTAGGTGAAGAGAATCCAACCGCCCTTCCAAATCTAGTGTTGCAAGCTACAGAGAACCTAAGTGATCAGTATATTATTGGCAGAGGAGCACATGGTATTGTGTACAAAGCTTTACTTGGACAACATGTTTTTGCTGTGAAAAAGTTTGAATTCACAAGGAGAAGGGAAAAGCAACTACGTATGATGAGCAAAGAAATTCAAGTGCTTGGAAAGTATAAGCATCGAAACTTAATCAAATATGCAGACTATTGGATTGGAGCTGACTATGGTTTAGTCTTGTATGAATTCATAGAAAATGGAAGCCTTCATGATATTTTGCATGAAAAAAATCCCCCTCCACTCTTAACGTGGAATGTCAGGTTGAACATAGCTGTCGGAATTGCTGAAGGACTAGCATATCTGCATAATAATTGTGACCCACCCATAGTGCATCGAGACATTAAACCAAAAAATATTCTTATTGATGACAATATGGAGCCAATTATAGCTGATTTTGGTACTGCCCTATACAGGAACTTGAATGAAGATTCTTATAGTCATTCGGAAACCAGGAAAATGCTTTCAACGATGGTTGTTGGTACCCCTGGCTATATTGCACCAGAGAATGCATATGCAGTAGTGCAGGGTAGGAAGTCTGATGTATATAGCTACGGCGTTGTTTTGCTCGAGCTAATAACCAGAAAGAAAGTGGTAATTCCCTCTTTGAATGATGAGGCAAATGTGACATCTTTAGTGAGCTGGGCTAGATCTGTATGGCTGGAAACTCGCAAAATTGATTACATTGCTGATTCATACCTTGCGAGTTTATGTCGCAATTCAACAGCACTGACCAAGCAAGTCACAGGGATGTTTTTATTGGCTTTGGAATGCACAGAGAAGGATCTAAGAAAGAGACCAACCATGAAAGATGTCATTGCCTTGTATAAAAGGGACACGTTTAAGCGGTGTGATGAGGAGGAATACAGGGATATGATTGTCAACATTGATCACCATATACATGGAGAAAGCAGTAAGGCTGCAGCCCAAAGACAAAGAGAAGTTACATTTACTGTGGATATTGGTCAATTTCAATCCGGATTCAGTGTTGAAGATGATTGGAGTCGCATACCTAAAATTTATATTGATGGACTTTTAGTTAAACTGATGGGAAATGGTAGGATAATGGCTGAAAATGTTTTGGTCGTAGCTGCTATGAATGTTCCAAAAGTAACCTATGTTTGGCCTAGTTTGATTTTCCTTCCCTCTGTCGTTGGTCCAATAGTAACCAAACCTTTCAATTGGTTTTTTCTGTCATGTTGGGGCCAATATATGCACCTTCATAAATCCTTGTCTTATCAACCCAAATCATACTTCATAAATGCCAATAAAGTCAATGCCCTACAGGAACTAGTATTGGAGGCTACACAGAACCTAAATGATCGTTATATTATTAGCAGAAAAGCACACTGTAGTGTGTATAAAGCCATACTTGGTCAACAAGTGTTTGCTTTAAAGAAGTTTGAATTTGGAAGGAACAAGCAAAAGCAGCTAAGTATCATGCTCAATGAAATTGAAGTCCTTGGAATGTTTAAGCATCGAAATTTAATCAAATACACAGACTACTGGATTGGAGGCCATTATGGTTTGGTCTTATATAAATTCATGGAAAACGGAAGCCTTCATGATATTTTGTATGAGAAGAAACCCCCACTGCCAATTACGTGGAGTGACCGGTTTAAGATTGCTGTTGGGATTGCTAAAGGATTAGCACATATGCATTACAATTGTATCCTACCCTTAATGCACGGCGACATCAAACCAAAGAACATACTTCTTGATGCTAATATGGAGCCTATTATAGCTGGTTTTGATACTGGCCTACTATGGAACCTGTCTGAGGTTTCATATAATCATTCTGAAACCAGGCAAATGTTTTCGTTGCACGTTATTGGTACGCCAGGTTATATTGCACCAGAGAATGCATATATAGTGGGGCAGGGAAGAAAGTCTGATGTATATAGCTACGGAGTTGTTTTGCTCGAGCTAATAACCAGAAAGAAAGTGTTTGTTCCCTCTTTGAATGACGGGACACACGTGACCACATTAGTGAGCTGGGCTAGATCTATATGGATGGAAACAGGCAAAATTGAGAATATTGCTGATTCATACCTTGCGAGTTCATTTCCTAATTCAGCAGCACTGACCAAACAAGTGACGAAAGTGTTTTTATTGGCATTACAATGCACAGATAGGGAGCTACGGAATAGACCGACCATGAAAGATGTTATTGGCTTGTATAATAGTGACTTGTTTAAGTGGAGTCGTGGTGAGGTCGAACATCGTGATGCAGTTGCAGCTAATCATAATGCAAGTGGCCAACTGTCATAA 4386 0.3839 MTKTSCSSRIIKLLLIISFLHVGYALTSDGLTLLSLLRKWTFVPLLINSTWNASDSNPCSWVGVQCDPTHNVISLNLTSHGILGQLGSEIGNLYHLQTLMLLGNGFSGKVPLELSNCSLLQYLDLEGNRFSGNIPYSLKSLQNLQFMRLSSNMLSGEIPDSLFEIPSLNEVSLHSNLLSGPIPTNIGNLTNLLRLYLYGNQFSGTIPSSIGNCSKLEDLELSFNRLSGEIPNSVWRIPSLVNILVHNNSLSGELPFEMTNLKYLRNISLFDNQFSGVIPQSLGINSSIVKLDCMNNKFGGTIPPNLCFGKNLRELNMGINQFQGGVPSDVGRCATLVRLFLNDNNFTGSLPYFESNLNLKYMDMSKNNISGPIPSSLGNSSNLTYINLSRNKFAGPIPSELGNLVNLVILDLSHNNLQGSLPLRLSNCTKLDRFDVGFNFLNGSFPSSLRSWTNITTLILRENHFTGGIPGFLAELSNLRELQLGGNLFGGKIPRSMGKLLNLFYGLNLSANGLIGDVPSEIGKLGLLQSLDISLNNLSGSIDALEDLVSLIEVNISYNLFNGSVPKVLMKLLYSSPSSFMGNPLLCVSCLSCINTSYINSCVHKSTDHKGISNVQIVMIELGSSILISAVLVMIIKRHFHRKNSDTKDLKHWYYYGRGAGMIGVRYAHESNILGEENPTALPNLVLQATENLSDQYIIGRGAHGIVYKALLGQHVFAVKKFEFTRRREKQLRMMSKEIQVLGKYKHRNLIKYADYWIGADYGLVLYEFIENGSLHDILHEKNPPPLLTWNVRLNIAVGIAEGLAYLHNNCDPPIVHRDIKPKNILIDDNMEPIIADFGTALYRNLNEDSYSHSETRKMLSTMVVGTPGYIAPENAYAVVQGRKSDVYSYGVVLLELITRKKVVIPSLNDEANVTSLVSWARSVWLETRKIDYIADSYLASLCRNSTALTKQVTGMFLLALECTEKDLRKRPTMKDVIALYKRDTFKRCDEEEYRDMIVNIDHHIHGESSKAAAQRQREVTFTVDIGQFQSGFSVEDDWSRIPKIYIDGLLVKLMGNGRIMAENVLVVAAMNVPKVTYVWPSLIFLPSVVGPIVTKPFNWFFLSCWGQYMHLHKSLSYQPKSYFINANKVNALQELVLEATQNLNDRYIISRKAHCSVYKAILGQQVFALKKFEFGRNKQKQLSIMLNEIEVLGMFKHRNLIKYTDYWIGGHYGLVLYKFMENGSLHDILYEKKPPLPITWSDRFKIAVGIAKGLAHMHYNCILPLMHGDIKPKNILLDANMEPIIAGFDTGLLWNLSEVSYNHSETRQMFSLHVIGTPGYIAPENAYIVGQGRKSDVYSYGVVLLELITRKKVFVPSLNDGTHVTTLVSWARSIWMETGKIENIADSYLASSFPNSAALTKQVTKVFLLALQCTDRELRNRPTMKDVIGLYNSDLFKWSRGEVEHRDAVAANHNASGQLS 1461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04481 1461 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 770 991 - -
Trre10g04481 1461 SMART serkin_6 1144 1437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04481 1461 SMART serkin_6 693 987 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04481 1461 Gene3D Ribonuclease Inhibitor 284 357 IPR032675 -
Trre10g04481 1461 Gene3D Ribonuclease Inhibitor 29 181 IPR032675 -
Trre10g04481 1461 Gene3D Ribonuclease Inhibitor 182 283 IPR032675 -
Trre10g04481 1461 ProSiteProfiles Protein kinase domain profile. 693 986 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04481 1461 Pfam Protein kinase domain 1157 1427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04481 1461 Pfam Protein kinase domain 697 978 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04481 1461 SUPERFAMILY L domain-like 66 354 - -
Trre10g04481 1461 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Trre10g04481 1461 ProSitePatterns Protein kinases ATP-binding region signature. 699 721 IPR017441 GO:0005524
Trre10g04481 1461 ProSiteProfiles Protein kinase domain profile. 1144 1437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04481 1461 SUPERFAMILY RNI-like 267 577 - -
Trre10g04481 1461 Gene3D Transferase(Phosphotransferase) domain 1 770 1003 - -
Trre10g04481 1461 Gene3D Transferase(Phosphotransferase) domain 1 1221 1444 - -
Trre10g04481 1461 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 186 282 - -
Trre10g04481 1461 SMART LRR_typ_2 189 213 IPR003591 -
Trre10g04481 1461 SMART LRR_typ_2 404 428 IPR003591 -
Trre10g04481 1461 SMART LRR_typ_2 476 500 IPR003591 -
Trre10g04481 1461 SMART LRR_typ_2 141 165 IPR003591 -
Trre10g04481 1461 Gene3D Phosphorylase Kinase; domain 1 679 769 - -
Trre10g04481 1461 Gene3D Phosphorylase Kinase; domain 1 1125 1220 - -
Trre10g04481 1461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1266 1278 IPR008271 GO:0004672|GO:0006468
Trre10g04481 1461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 815 827 IPR008271 GO:0004672|GO:0006468
Trre10g04481 1461 FunFam Leucine-rich repeat receptor-like protein kinase 28 184 - -
Trre10g04481 1461 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 327 976 - -
Trre10g04481 1461 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 1221 1434 - -
Trre10g04481 1461 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 310 596 - -
Trre10g04481 1461 Gene3D Ribonuclease Inhibitor 358 594 IPR032675 -
Trre10g04481 1461 SUPERFAMILY Protein kinase-like (PK-like) 1135 1429 IPR011009 -
Trre10g04481 1461 SUPERFAMILY Protein kinase-like (PK-like) 683 979 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04481 Trre-Chr10 53872836 53877509 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04481 104 995 Receptor kinase-like Gene Family AT1G73080 45.304 0.0 711
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre10g04481 Pkinase 4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04481 - - tpra:123924637 2549.24