Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04478 ATGGTAGTTAATCAGATGCACAGATTGTTAAATTTGCAAATGATACACAAAGAAGGAAAACAGATCTCTGTACTATTTGAAAGACTGGCGTCAACAATAGGGTTGGAAGAACTGCGTGACGCAACCGAATCTTTCACTGTGGACAATGCCATTGGGGCAGGAAAGATGGGAATGATGTACCTAGGATTTCTGCCTAATGGTCAGTCATTAGCTGTTAAGAGACTATTTGACTCTAAACTATATACAAGACAGTTCCTTTTAGAAACAATGATTATAGGTAGGTACAAACACAAAAATATAGTTCCCCTGCTTGGTTTCTGCATTGAAGGAAAAGAAAGGCTTTTGGCATACCCATACATGTCAAATGGAAGGCTTTCCAAATGGTTGCATCCTTTTGAAAGTGAAGTCATAAGATTGAAATGGCATCAGAGGGTCAACATTGCACTTGGAATAGCAAGAGGATTATCATGGCTACATCATACATATAATCTTGGAGCAACGTTTAAAGTGAATGATGGGAAGAAGGATGTCTATGCCTTCGGAAGTGTGCTTTTTGAACTGATTACAGGAAAATCATATACTGAGTTGTCGCATTCATATGACTTATGCAATAACCCTTTGAGATTTTATAATGTAATTGATAAATCTGTGATAGAGGAAGGACTTGAAAATGAAGTTTGTACTCTCATCAAGATTGCTTGTGAGTGTGTTCACCCTTTACTGGACCAAAGGCCAACGATGCTTGAAGTTTACAACAATATGAACAATGTAAGTATTGGAGGAAGGAAATGGCTCTGA 798 0.3784 MVVNQMHRLLNLQMIHKEGKQISVLFERLASTIGLEELRDATESFTVDNAIGAGKMGMMYLGFLPNGQSLAVKRLFDSKLYTRQFLLETMIIGRYKHKNIVPLLGFCIEGKERLLAYPYMSNGRLSKWLHPFESEVIRLKWHQRVNIALGIARGLSWLHHTYNLGATFKVNDGKKDVYAFGSVLFELITGKSYTELSHSYDLCNNPLRFYNVIDKSVIEEGLENEVCTLIKIACECVHPLLDQRPTMLEVYNNMNNVSIGGRKWL 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04478 265 Gene3D Transferase(Phosphotransferase) domain 1 120 165 - -
Trre10g04478 265 Gene3D Phosphorylase Kinase; domain 1 6 119 - -
Trre10g04478 265 Pfam Protein tyrosine and serine/threonine kinase 47 160 IPR001245 GO:0004672|GO:0006468
Trre10g04478 265 Gene3D Transferase(Phosphotransferase) domain 1 166 260 - -
Trre10g04478 265 SUPERFAMILY Protein kinase-like (PK-like) 26 252 IPR011009 -
Trre10g04478 265 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 174 255 - -
Trre10g04478 265 ProSiteProfiles Protein kinase domain profile. 45 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04478 Trre-Chr10 53859422 53860447 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04478 24 257 Receptor kinase-like Gene Family AT1G69990 29.195 6.32e-35 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Trre10g04478 PK_Tyr_Ser-Thr 7.1e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04478 - - psat:127106772 375.555