Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04473 ATGCCAAGGGAATATGAAATCAACATTCGTCCATTAATGGATGATCGACGGCGACAAGAAATAGCAGCGTTTATCATTCAAGTAAATGTTGCGTTTAAAGATAACAAGGAAAAATATTCTGAGTTTGAACAAGTCATGAAGGATTACAAGGATCACAAAACTGGAACATTAAGTGTCGTTCAAATGGGGAACAAGCTGTTTAAAGGACACACTGATTTACATTTGGAATTCACCAACTTGATGCCAGATGAATATCAAATCAAACTTCCATTGTATCATGATCATAAACAAGGTCATCAATTAGTGATAAAAGATGCATTTCTCAATCAAGTCAAACTTGTGTTTCAAAATAACATGGAAATATATTTTGACTTTTTACAAATCATCAATGATCACAAGGTTCAAGGAATTGACATAAGAGGTGTAGCGGCAATAGTGAAAGAGCTCTTTAAAGGGCATACAAATTTAATTTTGGGATTCAATGCCTTCCTACCAAAGGAATATAAAATCACTCTTCCATTTCAGCTTCATGGTCATGATAAGACAGGAAAAAAAGTGAAGGTAACAGAGAATTGTCAACTTCCTTGGGATGTCCTTGATATCATTTCCAGAACTCTAGATTTCGATGACCTCTTCGAATTTGCTGGTGTGTGCAAAAATTGGAGGGCATTTCATAAAATGTATTGGAGATTGGCATTTCAAGAACCACTACTTGTTCAAAAGTCTTCCCTTGTTAAGAAATCTTATTCCTTTATCAGCATACCTAACCAAAAAGTTTATCACTCAAAGATGATCAATTATTTTTGGCACTTTGCTTATTCTGGATCTTCTAGCGGATATTTGATCATGACAGGGAAAAATAATTCATTTCTGCTGATGAATCCATTTACAAGAAGAAAGAAGGTAATCAATACCTCAACCTTTAAAGTAAAATTTTCTTATTTTGCCTACCATGTCTTACTTGCTTTTGCAAAAGGCTCCAAGGATTTTGTCTTACTGGCTTTATGTAAAAGTTCTAATAGTTTGCATGTCTATCAATCTCAAAATGTTGGTTGGGTTACTTATTCAAAAAAGGGATATCCATGGATGATTGTTGACTTCGTTGTTTTGCATAACACTATATATGTTGTCACAGACATGGGCAACATAGGGGTACTCAACTTAAATTCTGCAAATATAAAATTTCTAGAAATGAAAAGTACTCCTATTGTAACTTCTTTGTCATGCCTAAGGTTGGTTACCTGTGATGGACAACTTTTTGTGATTCATACTAAGCCCAGTGTAGTGTTTAATGTGTACACGATTGACTTCTCAATTATGAATTATGTCAAATTGAAAACTTTGGGTGACATAGCATTATTTTGTGCTCCGGGGGGAAACTACCATGCATTGAGCAACCCAGGCGCATGGGGTTATGAAAGCAACTCAGTGTATGTCATCAATCGTTCATCTACAAAATGCAGAGTGTATTTAGGGGACGATAACAAACTGCCGAAATACATTAATTACAATAGACCTCAAGCTCCTCCTAATGAAAGACCTTGCTTGTTGGACTGGTGTTTTAGGCATCTACACTACGAGGTAGATTATTCTCTAGTTGAGTAG 1605 0.3539 MPREYEINIRPLMDDRRRQEIAAFIIQVNVAFKDNKEKYSEFEQVMKDYKDHKTGTLSVVQMGNKLFKGHTDLHLEFTNLMPDEYQIKLPLYHDHKQGHQLVIKDAFLNQVKLVFQNNMEIYFDFLQIINDHKVQGIDIRGVAAIVKELFKGHTNLILGFNAFLPKEYKITLPFQLHGHDKTGKKVKVTENCQLPWDVLDIISRTLDFDDLFEFAGVCKNWRAFHKMYWRLAFQEPLLVQKSSLVKKSYSFISIPNQKVYHSKMINYFWHFAYSGSSSGYLIMTGKNNSFLLMNPFTRRKKVINTSTFKVKFSYFAYHVLLAFAKGSKDFVLLALCKSSNSLHVYQSQNVGWVTYSKKGYPWMIVDFVVLHNTIYVVTDMGNIGVLNLNSANIKFLEMKSTPIVTSLSCLRLVTCDGQLFVIHTKPSVVFNVYTIDFSIMNYVKLKTLGDIALFCAPGGNYHALSNPGAWGYESNSVYVINRSSTKCRVYLGDDNKLPKYINYNRPQAPPNERPCLLDWCFRHLHYEVDYSLVE 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04473 534 SUPERFAMILY PAH2 domain 19 83 IPR036600 GO:0006355
Trre10g04473 534 ProSiteProfiles F-box domain profile. 188 232 IPR001810 GO:0005515
Trre10g04473 534 SUPERFAMILY Tricorn protease domain 2 269 493 - -
Trre10g04473 534 SUPERFAMILY PAH2 domain 106 166 IPR036600 GO:0006355
Trre10g04473 534 Pfam Paired amphipathic helix repeat 120 164 IPR003822 GO:0006355
Trre10g04473 534 Pfam Paired amphipathic helix repeat 37 78 IPR003822 GO:0006355
Trre10g04473 534 Pfam F-box domain 193 223 IPR001810 GO:0005515
Trre10g04473 534 ProSiteProfiles PAH domain profile. 89 167 IPR003822 GO:0006355
Trre10g04473 534 ProSiteProfiles PAH domain profile. 10 84 IPR003822 GO:0006355
Trre10g04473 534 CDD F-box_SF 193 224 - -
Trre10g04473 534 SUPERFAMILY F-box domain 192 237 IPR036047 GO:0005515
Trre10g04473 534 Gene3D Paired amphipathic helix 106 165 IPR036600 GO:0006355
Trre10g04473 534 Gene3D Paired amphipathic helix 22 82 IPR036600 GO:0006355
Trre10g04473 534 PANTHER OS06G0113600 PROTEIN 198 502 - -
Trre10g04473 534 FunFam Paired amphipathic helix protein Sin3 105 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04473 Trre-Chr10 53845677 53847281 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04473 107 172 WRKY Transcription Factor Family AT4G12020 51.515 5.43e-13 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre10g04473 PAH 5.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04473 - - cam:101488742 691.419