Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04472 ATGACCAAAACTAGTTGTAGCAGTAGAATTATCAAACTCTTGTTGATTATTTCCTTCTTGCATGTTGGTTATGCTCTTACCTCTGATGGTTTGACTCTGTTGTCACTCTTGAGAAAGTGGACTTTTGTTCCTCTTCTCATCAATTCTAGCTGGAATGTTTCTGATTCCAATCCATGTTCATGGGTTGGTATTCAATGTGACCATACTCACAATATCATTTCCATTAACCTAACTCGTCTTGGGGTTTCTGGTCAACTTGGACCTGAAATTGGAAACCTTAAACATTTGCAGACCCTTATGTTGTTAGGTAATGGTTTCTCAGGAAAACTCCCTTTAGAGTTAAGTAACTGTAGTTTGCTTCAGTATTTAGATCTTGAAGGTAATAGATTCAGTGGAAATATACCATATAGTTTGAAAAACTTGCAAAATTTACAGTTCATGAGATTGTCTTCCAATATGCTGAGTGGCGAAATTCCGGATTCTTTGTTTGAAATTCCTTCCCTTAAAGAAGTGAGTATACACAGTAACCTTCTTAGTGGTCCTATTCCAACCAATATTGGAAACTTGACAAATCTGTTAAGACTGTATCTATATGGTAATCAGTTTTCAGGGACTATTCCTTCATCCATTGGTAATTGCAGTAAACTAGAGGACCTTGAATTGTCTTTCAACCGATTGAATGGTGAAATTCCAAACAGTATTTGGAGAATTCCAAGTCTTGTGAACATATTGGTTCACAATAACAGCCTCTCCAGGGAGCTACCATTTGATATGACAAATCTCAAGTATCTAAAAAATATTTCATTGTTTGATAATCAGTTCTCAGGAGTCATACCGCAAAGTTTAGGAATCAACAGCAGCTTAGTGAAGTTGGACTGTATGAATAACAAGTTCAGTGGTACTATCCCGCCAAATCTTTGCTTTGGTAAGAATTTGCGTGAGCTCAATATGGGAAGAAGTCAACTTCAAGGGAGTGTACCTTCTGATGTAGGAAGATGTGCAACTCTAGTGAGGTTGTTTCTCAATGATAATAATTTCACCGGATCTCTTCCTTATTTTGAAAGTAATCTGAACCTGAAATACATGGACATGAGCAAGAACAATATCAGTGGACCGATTCCATCAAGTTTGGGAAATTGTTCAAATCTCACGTACATTAATTTGTCGAGGAACAAATTTGCAGGACCTATACCATCAAAGCTTGGAAACCTTGTGAATCTTGTGATTTTGGATCTTTCTCATAACAACTTGCAAGGTTCTTTGCCACTTCGGCTGTCAAATTGTACTAAATTGGATCATTTTGATGTGGGATTCAATTTCCTAAATGGCTCATTCCCTTCAAGTTTGAGAAGTTGGACAAACATAACCACATTGATTTTAAGAGAAAATCACTTCACGGGAGGTATACCAGGGTTTTTGGCAGAACTTAGCAACCTTCGCGAGTTACAACTTGGTGGAAATTTGTTTGGAGGAAAAATTCCACGATTGATGGGAAAACTGCATAATTTGTTCTATGGATTGAATCTGAGTGCTAATGGATTGATAGGTGACGTTCCTTCAGAAATCGGGAAGCTTGGACTACTTCAAAGTCTGGATATATCGTTGAACAATTTATCCGGAAGCATAGATGCTTTCGAAGATCTTGTTTCATTAATTGAAGTCAATATTTCTTACAATCTCTTCAACGGTTCTGTACCAAAAGGTCTAATGAAGTTATTGAATTCCTCACCATCATCATTCATGGGTAATCCTCTCCTATGTGTCAGTTGTTTGAGTTGCATTAAAACTAGTTATATAAATCCATGTGTTTACAAATTAACTGATCACAAAGGTATCAGCAATGTTCAAATTGTGATGATAGAACTTGGATCCTCAATATTGATTTCTGCTATTCTGGTAATAATAATTAAAAGGCGTTTCCATCGAAAGGATTCAGATACGAAAGATCTAAACCATTGGTATTATGATGGTGGAGTATCTGGAATGATTGAAAAAGGAGCTGGAATGATTGGAGTCAGATATGCTCACGAATCGAACATCATAGGGGAAGAGAATCCAACCGCCCTTCCGAATCTAGTGTTGGAAGCTACTGAGAACCTAAGTGATCAGTATATTATTGGCAGAGGAGCACATGGTATTGTGTACAAAGCTTTACTTGGACAACACGTTTTTGCTGTGAAAAAGTTTGAATTCGCAAGGAGAAAGGAAAAGCAACTACGTATGATGAGCAAAGAAATTGAAGTGCTTGGAATGTATAAGCATCAAAACTTAATCAAATATGCAGACTATTGGATTGGAGCTGACTATGGTTTAGTCTTGTATGAATTCATAGAAAATGGAAGCCTTCATGATATTTTGCATGAAAAGAATCCCCCTCCACTCTTAACGTGGAATGTCAGGTTGAACATAGCTGTCGGAATTGCTGAAGGACTAGCATATCTGCATAATAATTGTGACCCACCCATAGTGCATCGAGACATTAAACCAAAAAATATTCTTATTGATGACAATATGGAGCCAATTATAGCTGATTTTGGTACTGCCCTATACAGGAACTTGAATGAAGATTCTTATAGTCATTCGGAAACCAGAAAAATGCTTTCAACGATGGTTGTTGGTACCCCTGGCTATATTGCACCAGAGAATGCATATGCAGTAGTGCAGGGTAGGAAGTCTGATGTATATAGCTACGGCGTTGTTTTGCTCGAGCTAATAACCAGAAAGAAAGTGGTAATTCCCTCTTTGAATGATGAGGCAAATGTGACATCTTTAGTGAGCTGGGCTAGATCTGTATGGCTGGAAACTCGCAAAATTGATTACATTGCTGATTCATACCTTGCGAGTTTATGTCGCAATTCAACAGCACTGACCAAGCAAGTCACAGGAATGTTTTTATTGGCTTTGCAATGCACAGAGAAGGATCTAAGAAAGAGACCAACCATGAAAGATGTTATTGGCTTGTATAAAAGGGACACGTTTAAGCGGTGTGATGAGGAGGAATACAGGGATATGATTGTCAACATTGATCACCATATACATGGAGAAAGCAGTAAGGCTGCAGCCCAAACACAAAGAGAAGTTACATTTACTGATGGACTTTTAGTTAAACTGATGGGAAATAGTAGGATAATGGCTGAAAATGTTTTGGTCGTAGCGGCTATGAATGTTCCAAAAGTAACCTATGTTTGGCCTAGTTTAATTTTTCTTCCTTCTGTCAATGGTCCAGTAGTTACGAAACCTTTCAATTGGTTTTTTCTCTCACGTTGGGGCCAATATATGCACCTTCATAAATCCTTGTATTATCAATCCAAATCATACTTCATAAATGCCAATAAAGTCAATGCCCTACAGGAACTAGTATTGGAGGCTACAGAGAACCTAAATGATCGTTATATTATTAGCAGAAAAGCACACTGTAGTGTGTATAAAGCCATACTTGGTCAACAAGTGTTTGCTTTAAAGAAGTTTGAATTTGGAAGGAACAAGCAAAAGCAGCTAAGTATCATGCTCGACGAAATTGAAGTCCTTGGAATGTTTAAGCATCAAAATTTAATCAAATACACAGACTATTGGATTGGAGGCCATTATGGTTTGGTCTTATATAAATTCATGCAAAACGGAAGCCTTCATGATATTTTGCATGAGAAGAAACCCCCACTGCCAATTACGTGGAGTGACCGGTTTAAGATTGCTGTTGGAATTGCTAAAGGATTAGCACATATGCATTACAATTGTATCCGACCCTTAATGCACGGAGACGTAAAACCAAAAAACATACTTCTTGATGCTAATATGGAGCCTATTATAGCTGGTTTTGATACTGCCCTTGTATGGGACCTGTCTGACGTTTCTTATAGTCATTCCGAAAGGAGGCAAATGTTGTCGTTGCACGTTATTGGTACGCCAGGTTATATTGCACCAGAGAATGCCTATGAAGTAGGGCAAGGAAGACAGTCTGATACTCTGATGTATTTAGCTACGGAGTTATTTTGCTCGAGCTTATAA 4005 0.3783 MTKTSCSSRIIKLLLIISFLHVGYALTSDGLTLLSLLRKWTFVPLLINSSWNVSDSNPCSWVGIQCDHTHNIISINLTRLGVSGQLGPEIGNLKHLQTLMLLGNGFSGKLPLELSNCSLLQYLDLEGNRFSGNIPYSLKNLQNLQFMRLSSNMLSGEIPDSLFEIPSLKEVSIHSNLLSGPIPTNIGNLTNLLRLYLYGNQFSGTIPSSIGNCSKLEDLELSFNRLNGEIPNSIWRIPSLVNILVHNNSLSRELPFDMTNLKYLKNISLFDNQFSGVIPQSLGINSSLVKLDCMNNKFSGTIPPNLCFGKNLRELNMGRSQLQGSVPSDVGRCATLVRLFLNDNNFTGSLPYFESNLNLKYMDMSKNNISGPIPSSLGNCSNLTYINLSRNKFAGPIPSKLGNLVNLVILDLSHNNLQGSLPLRLSNCTKLDHFDVGFNFLNGSFPSSLRSWTNITTLILRENHFTGGIPGFLAELSNLRELQLGGNLFGGKIPRLMGKLHNLFYGLNLSANGLIGDVPSEIGKLGLLQSLDISLNNLSGSIDAFEDLVSLIEVNISYNLFNGSVPKGLMKLLNSSPSSFMGNPLLCVSCLSCIKTSYINPCVYKLTDHKGISNVQIVMIELGSSILISAILVIIIKRRFHRKDSDTKDLNHWYYDGGVSGMIEKGAGMIGVRYAHESNIIGEENPTALPNLVLEATENLSDQYIIGRGAHGIVYKALLGQHVFAVKKFEFARRKEKQLRMMSKEIEVLGMYKHQNLIKYADYWIGADYGLVLYEFIENGSLHDILHEKNPPPLLTWNVRLNIAVGIAEGLAYLHNNCDPPIVHRDIKPKNILIDDNMEPIIADFGTALYRNLNEDSYSHSETRKMLSTMVVGTPGYIAPENAYAVVQGRKSDVYSYGVVLLELITRKKVVIPSLNDEANVTSLVSWARSVWLETRKIDYIADSYLASLCRNSTALTKQVTGMFLLALQCTEKDLRKRPTMKDVIGLYKRDTFKRCDEEEYRDMIVNIDHHIHGESSKAAAQTQREVTFTDGLLVKLMGNSRIMAENVLVVAAMNVPKVTYVWPSLIFLPSVNGPVVTKPFNWFFLSRWGQYMHLHKSLYYQSKSYFINANKVNALQELVLEATENLNDRYIISRKAHCSVYKAILGQQVFALKKFEFGRNKQKQLSIMLDEIEVLGMFKHQNLIKYTDYWIGGHYGLVLYKFMQNGSLHDILHEKKPPLPITWSDRFKIAVGIAKGLAHMHYNCIRPLMHGDVKPKNILLDANMEPIIAGFDTALVWDLSDVSYSHSERRQMLSLHVIGTPGYIAPENAYEVGQGRQSDTLMYLATELFCSSL 1334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04472 1334 ProSitePatterns Protein kinases ATP-binding region signature. 706 728 IPR017441 GO:0005524
Trre10g04472 1334 SUPERFAMILY RNI-like 266 578 - -
Trre10g04472 1334 Gene3D Ribonuclease Inhibitor 29 182 IPR032675 -
Trre10g04472 1334 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 183 273 - -
Trre10g04472 1334 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 321 983 - -
Trre10g04472 1334 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Trre10g04472 1334 SMART LRR_typ_2 476 500 IPR003591 -
Trre10g04472 1334 SMART LRR_typ_2 189 213 IPR003591 -
Trre10g04472 1334 SMART LRR_typ_2 525 547 IPR003591 -
Trre10g04472 1334 SMART LRR_typ_2 404 428 IPR003591 -
Trre10g04472 1334 SMART LRR_typ_2 141 165 IPR003591 -
Trre10g04472 1334 SUPERFAMILY L domain-like 50 351 - -
Trre10g04472 1334 Gene3D Ribonuclease Inhibitor 356 594 IPR032675 -
Trre10g04472 1334 SUPERFAMILY Protein kinase-like (PK-like) 1116 1320 IPR011009 -
Trre10g04472 1334 Gene3D Ribonuclease Inhibitor 183 284 IPR032675 -
Trre10g04472 1334 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 26 181 - -
Trre10g04472 1334 ProSiteProfiles Protein kinase domain profile. 700 993 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04472 1334 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 274 597 - -
Trre10g04472 1334 ProSiteProfiles Protein kinase domain profile. 1127 1334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04472 1334 Gene3D Ribonuclease Inhibitor 285 355 IPR032675 -
Trre10g04472 1334 Gene3D Transferase(Phosphotransferase) domain 1 777 1010 - -
Trre10g04472 1334 Gene3D Transferase(Phosphotransferase) domain 1 1108 1321 - -
Trre10g04472 1334 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1249 1261 IPR008271 GO:0004672|GO:0006468
Trre10g04472 1334 SMART serkin_6 700 994 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04472 1334 Gene3D Phosphorylase Kinase; domain 1 686 776 - -
Trre10g04472 1334 ProSitePatterns Serine/Threonine protein kinases active-site signature. 822 834 IPR008271 GO:0004672|GO:0006468
Trre10g04472 1334 SUPERFAMILY Protein kinase-like (PK-like) 690 985 IPR011009 -
Trre10g04472 1334 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 777 996 - -
Trre10g04472 1334 Pfam Protein kinase domain 1140 1318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04472 1334 Pfam Protein kinase domain 704 984 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04472 Trre-Chr10 53829914 53834189 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04472 25 572 Receptor kinase-like Gene Family AT1G73080 38.731 3.58e-98 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre10g04472 Pkinase 5.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04472 - - tpra:123924637 2251.86