Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04471 ATGGGAATCAATCGACTTCGAAGTGGCATACCTTCTGATGTAGGAAGTTGTAAAACTCTAAGGAGGTTGATTCTCAATGAGAATAATTTCACCGGCCCTCTTCCTAATTTTGAAAGTAATATGAATCTAAAATACATGGACCTGGCCAAGAACAGTATCAGTGGACCGATTCCATCAAGTTTGGGAAATAGCACATATATCACATACATTAATTTGTCAAGGAACAAATTTGAAGGGCTCATACCACCAGAGCTTGGAAACCTTATCAATCTTGTGGTTTTGGATCTTTCTCACAACAACTTGGAAGGTCCTTTGCCACTTCAGCTGTCAAATTGTACTAAATTAGATCGTTTTGATTTGGGTTTCAATTTCCTAAATGGCTCATTCCCTTCAAGTTTGAGAAGTTGGACAAACATAATCACATTGATTTTAAGAGAAAATCACTTCACAGGAGGTAAACCAGGGTTTTTGGCAGAACTTAGCAACCTTCGCGAGTTACAACTTGGTGGAAATTTGTTTGGAGGAAAAATTCCTCGTTCGATGGGAAAATTGCATAATTTGTTCTATGGATTGAATCTGAGTTCTAATGGATTGATAGGTGACATTCCTTCCAAAATTGGGAAGCTTGGACTGCTTCAAAGTCTAGATATATCCTTGAACAATTTATCTGGAAGCATTGATGCCCCAACGGAAATGAAGCTGCCTGACGTTCATGATCGAGTGTTGGAGGCTACAGAAAACTTAAATGGTCAGTATATTATTGGCAGAGGAGCACATGGTATTGTGTACAAAGCCATAGTTTATCGACGTGTTTGTGCTGTAAAGAAGGTTGAATTTGGAAGGAACAAGCAAAAGTGGCTAAGTATCATGCACAACGAAATTAAGGTCCTTAGGATGCTTAGGCATCGAAATTTGATCAAATATTGTAACCACTGGATTGGAAATGACTATGGTTTAGTCATATATAAATTCATTGAAAATGGAAGCCTTTATAATATTTTGCATGTAAAGAAACCCCCACCACCTTTAACGTGGAATGTTCGATTTAATATAGCTTTTGGAATTGCTCAAGGACTAGCTTATCTGCATTATGATTGTGTTCCACCAATATTGCACAGAGACATCAAACCAAAGAACATACTTGTTGATGAAAATTTGGAGCCTATTATAGCTGATTTTGGCACTGCCCTATGCACAAAGTTATTTGAGGATTCTTATAGTCATTCTGAAACCAAGAAAATGCTTTCAGCGCACGTCGTTGGTACGCCTGGCTATATTGCACCAGAAAATGCTTATGATATAGTGCCGGGAAGAAAGTCTGATGTATATAGCTATGGAGTTTTTTTGCTCGAGATAATAACCAGAAAGAAATTGTTAGTTCCCTCCATAAATGATGAGGCGAAGGAGACACACATAGTGACCTGGACTAGATCTGTGTTGCTGGAAACAGGAAAAATTAAGAATATTGTTGATCCATACCTTACAAGTGCATTTCCCAATTCAGTAGCACTAGCCAAGCAAGTCAATGCAGTGACTTCGTTGGCATTACAATGCACAGAGAAGGATCCACAAAGGAGGCCGACCATGAAAGATGTTATTGCCTTTTATGATATGAACTTGTTTAAGCTGAGGTGTGATGCAGTGGAATATCGTGATGGACTTTCAATTAAACTGATGGGAATTGGTAAGATTCAATCTGAAAAATTTGTCGGGGTAGCGAATCTAGTTGTTCCAAAAATAACTTATGCTTGGCCTAGTTTGATCTTTCTACCCTCTATCACTGGTCCAATACTTACCAAACCTTTCAACTGGTTTTTCCTATCACGTTGGGGTCAATATAGGCACCTGCAGATATCCTTGTATTCACAGCCCAAATCATACTACTCTATAAACACAAATCAAACTGAGGCCACTGTCCAACGTCGTGTAAAAAATTGCAGAGGTAAGTTGGTGACAAAAAGCAAAGAGAGAGCTTAA 1977 0.3849 MGINRLRSGIPSDVGSCKTLRRLILNENNFTGPLPNFESNMNLKYMDLAKNSISGPIPSSLGNSTYITYINLSRNKFEGLIPPELGNLINLVVLDLSHNNLEGPLPLQLSNCTKLDRFDLGFNFLNGSFPSSLRSWTNIITLILRENHFTGGKPGFLAELSNLRELQLGGNLFGGKIPRSMGKLHNLFYGLNLSSNGLIGDIPSKIGKLGLLQSLDISLNNLSGSIDAPTEMKLPDVHDRVLEATENLNGQYIIGRGAHGIVYKAIVYRRVCAVKKVEFGRNKQKWLSIMHNEIKVLRMLRHRNLIKYCNHWIGNDYGLVIYKFIENGSLYNILHVKKPPPPLTWNVRFNIAFGIAQGLAYLHYDCVPPILHRDIKPKNILVDENLEPIIADFGTALCTKLFEDSYSHSETKKMLSAHVVGTPGYIAPENAYDIVPGRKSDVYSYGVFLLEIITRKKLLVPSINDEAKETHIVTWTRSVLLETGKIKNIVDPYLTSAFPNSVALAKQVNAVTSLALQCTEKDPQRRPTMKDVIAFYDMNLFKLRCDAVEYRDGLSIKLMGIGKIQSEKFVGVANLVVPKITYAWPSLIFLPSITGPILTKPFNWFFLSRWGQYRHLQISLYSQPKSYYSINTNQTEATVQRRVKNCRGKLVTKSKERA 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04471 658 Gene3D Transferase(Phosphotransferase) domain 1 325 543 - -
Trre10g04471 658 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 4 531 - -
Trre10g04471 658 Gene3D Ribonuclease Inhibitor 1 246 IPR032675 -
Trre10g04471 658 Gene3D Phosphorylase Kinase; domain 1 247 323 - -
Trre10g04471 658 Pfam Protein kinase domain 253 533 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04471 658 ProSiteProfiles Leucine-rich repeat profile. 90 111 IPR001611 GO:0005515
Trre10g04471 658 ProSitePatterns Protein kinases ATP-binding region signature. 254 276 IPR017441 GO:0005524
Trre10g04471 658 SMART serkin_6 248 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04471 658 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 35 131 - -
Trre10g04471 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 370 382 IPR008271 GO:0004672|GO:0006468
Trre10g04471 658 SUPERFAMILY Protein kinase-like (PK-like) 239 534 IPR011009 -
Trre10g04471 658 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 132 226 - -
Trre10g04471 658 ProSiteProfiles Protein kinase domain profile. 248 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04471 658 SUPERFAMILY L domain-like 4 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04471 Trre-Chr10 53825483 53827628 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04471 1 533 Receptor kinase-like Gene Family AT1G17750 34.783 4.36e-95 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre10g04471 Pkinase 9.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04471 - - mtr:11435193 610.912