LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre10g04469	ATGACTTATAGAACTAGTTTTAGCAGTAGAATTGTTACACACTTGTTATTCACTATTTCCTTCTTGCATGGTGCTACTACTCTTACCTCTGATGGGTTAACTCTGTTGTCACTCTTGAGAAACTGGACTTCTGTTCCTACTCACGTCAACTCTAGCTGGAATGCTTCTGATTCCAATCCATGCTCATGGGTTGGTATTCAATGTGACCATACCTACAATGTCATTTCCATTAACCTAACTCGTCTTGCGATTTTTGGTCAACTTGGATCTGAAATCGGAAACCTTTATCATTTGCAGACCCTTGTTTTGTTAGGTAATGGTTTCTCAGGGACTATTCCTTCATCTCTTGGTAATTGCAGCGAACTAGAGCACCTTGAATTGTCTTTCAACCGTTTGCGAGGCGAAATTCCGGTAAGTATTTGGAGAATTCCAAGTCTTGTGAACATATTGGTTAACGACAACAGCCTCTCTGGGGAACTACCTTTCGAGATGACAAACCTCAAGCATCTACAATATATCTCATTGTTTGATAATCAATTCTCAGGAGTCATACCTCAAAGCTTGGGAATCAACAGTAGCATAGTGAAGTTGGACTTTACCAATAACAAGTTCACTGGTAATATCCCGCCAAATCTTTGCTTTCGAAAGAATTTGCGTGAGCTCAATATGGGAAGCAATCAACTTCAAGGTGGTGTACCTTCTGATGTAGGAAGATGTACAATTCTAGTGAGGTTGTTTCTCAATGATAATAATTTCACCGGATCTCTTCCTAAATTTGAAAGTAATCTCAACCTCAAATACATGGACATAAGCAAGAACAATATCAGTGGACCAATTCCATCAAGTTTGGGAAATTGTACAAATCTCGGATATATGAATTTGTCATTGAACAAATTTGCAGGACTCGTACCATCAGAGCTTGGAAACCTTGTGAATCTTGTGATTTTGGATCTTTCTCACAATAAGTTGCAAGGTTCTTTGCCACTTCGGCTGTCAAATTGTACTAAAATGGATCGTTTTGATGTGGGATTCAATTTCCTAAATGGCTCATTCCCTTCAAGTTTGAGAAGTTGGACAAGCATAACCACATTGGTATTAAGTGAAAATCACTTTACAGGAGGTATCCCAGTGTTTTTGGAAGCATTTTGTTACCTTCGCGACTTACAACTTGGTGGAAATTTGTTTGGAGGCAAAATTCCTCGATCGATAGGAACATTGCAGACTCTGTTCTATGGATTGAATCTGAGTGCTAATGGATTGATAGGTGACATTCCTTCTGAAATTGGGAATCTTAGACTGCTTCAAAGTCTGGATATATCCTTGAACAATTTATCCGGAAGCATAGATGCTCTTGGAGATCTAGTTTCATTAACCGAGGTCAATATTTCTTACAATTTCTTCACTGGTTCTATACCAGCAGCAACCATTCTAGAAAAACTATTGAATTCCTCGCCTTCATCATTCATGGGTAATCCTCTCCTATGTTTTACATTGAATTGCATTCATACTCATAATTTGAATCCATCAGATAAAGTTAGTAAATTTCGAATTGTGATGATGGAAATTGGATCCTCACTATTTATTTCTGCCATCTTGGTAATAATAATTCGAAGGTATCTCCTTAGAAAGGATGTGTTTTTTAATGTAAGAGGAGAAGAAAGTTTTGAATTCACAAATGACAGTGATTACGAATTAAAGATCTCAACTGAAAAGGAGATGTCTCCCCTTCAAGAGCAAGTGCTGGAGGCTACAGAGAACCTAAAAGATGAGTATATTATTGGGAGAGGAGCACATGGTATTGTGTACAAAGCCATAATAGGTCAACAGGTTTGTGCTGTAAAGAAGCTTGAATTTGGACGCAACAAGCAAAAGCGGTTAGGTATCACGCGCAACGAAATTAAAGTCCTTAGGATCATTAAGCATCAAAATTTGATCAAATATGTTGACTACTGGATTGGAAAGGACTATGGTTTAGTCTTATATGAATTCATGGAAAATGGAAGTCTTTATGAAATTTTGCATGAAAAGAAACCTGCACCACCCTTAACATGGAATGTTCGGTGTAAGATAGCAGTTGGAATTGCTCAAGGACTAGCTTATCTTCATTATGATTGTATTCCACTAATCGTGCACCGAGACATCAAACCAAAGAACATACTTCTTGACAATAATATGGAGCCTGTTATAGCTGATTTTGGTACTGCCCTATGCAAGAAGCTGTTTGAGGATTCTAATAGTTATTCTGAAACCAGGAAAAGGCTTTCGTCGCACGTTGTAGGTACCCCTGGCTATATTGCACCGGAGAATGCGTATGATATAGTTCCTGGAAGAAAGTCTGATGTATATAGCTACGGAGTTGTTTTGCTCGAGCTAATAACTAGACAGAAATTATTAGTTGCGCCTATAAATGATGAGGTGAACAAGATCCACATAGTGACGTGGGCTAGATCTGTAATGATGGAAACAGGCAAGATTGAGAACATCGTTGATCCATACCTTGCAAGTGCATTTCCCAATTCAATAGCACTAACCATGCAAGTCACTGCAATGCTTTCATTGGCATTACAATGTACAGAGAAGGATCCAAAAAAGAGGCCGACCATGAAAGGTGTTATTGAATTTTATAATAAAAACTTGTTTAATCTGAGGTGTGATGAGGTTCAATATGGTGGTGATGGACTTGTAATTAAATGGATGGGAAATGGTAAGATTCGGTCTGAAAAGGTTTTCGGCATTGTGAATTTAGTTGTTCCAAAAATAACCTATGCTTGGTCTAGTTTGATCTTTCTTCCCTCGATCACTGGTCCAATACTTACCAAACCTTTCAACTGGTTCTTCCTATCACGTTGGGGTCAATATAGACACCTGCAGAAATCGTTGTATTCACAGCCCAAATCATACGACTCTATAAACACCAATCAAACTGAGGCCACTGTCCAAAATAGTGAATAG	2952	0.3831	MTYRTSFSSRIVTHLLFTISFLHGATTLTSDGLTLLSLLRNWTSVPTHVNSSWNASDSNPCSWVGIQCDHTYNVISINLTRLAIFGQLGSEIGNLYHLQTLVLLGNGFSGTIPSSLGNCSELEHLELSFNRLRGEIPVSIWRIPSLVNILVNDNSLSGELPFEMTNLKHLQYISLFDNQFSGVIPQSLGINSSIVKLDFTNNKFTGNIPPNLCFRKNLRELNMGSNQLQGGVPSDVGRCTILVRLFLNDNNFTGSLPKFESNLNLKYMDISKNNISGPIPSSLGNCTNLGYMNLSLNKFAGLVPSELGNLVNLVILDLSHNKLQGSLPLRLSNCTKMDRFDVGFNFLNGSFPSSLRSWTSITTLVLSENHFTGGIPVFLEAFCYLRDLQLGGNLFGGKIPRSIGTLQTLFYGLNLSANGLIGDIPSEIGNLRLLQSLDISLNNLSGSIDALGDLVSLTEVNISYNFFTGSIPAATILEKLLNSSPSSFMGNPLLCFTLNCIHTHNLNPSDKVSKFRIVMMEIGSSLFISAILVIIIRRYLLRKDVFFNVRGEESFEFTNDSDYELKISTEKEMSPLQEQVLEATENLKDEYIIGRGAHGIVYKAIIGQQVCAVKKLEFGRNKQKRLGITRNEIKVLRIIKHQNLIKYVDYWIGKDYGLVLYEFMENGSLYEILHEKKPAPPLTWNVRCKIAVGIAQGLAYLHYDCIPLIVHRDIKPKNILLDNNMEPVIADFGTALCKKLFEDSNSYSETRKRLSSHVVGTPGYIAPENAYDIVPGRKSDVYSYGVVLLELITRQKLLVAPINDEVNKIHIVTWARSVMMETGKIENIVDPYLASAFPNSIALTMQVTAMLSLALQCTEKDPKKRPTMKGVIEFYNKNLFNLRCDEVQYGGDGLVIKWMGNGKIRSEKVFGIVNLVVPKITYAWSSLIFLPSITGPILTKPFNWFFLSRWGQYRHLQKSLYSQPKSYDSINTNQTEATVQNSE	983

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre10g04469	983	SMART	serkin_6	587	875	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre10g04469	983	Pfam	Leucine rich repeat N-terminal domain	30	69	IPR013210	-
	Trre10g04469	983	ProSitePatterns	Protein kinases ATP-binding region signature.	593	615	IPR017441	GO:0005524
	Trre10g04469	983	Pfam	Protein kinase domain	590	872	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre10g04469	983	FunFam	Putative leucine-rich repeat receptor-like protein kinase family protein	180	505	-	-
	Trre10g04469	983	Gene3D	Phosphorylase Kinase; domain 1	566	663	-	-
	Trre10g04469	983	SUPERFAMILY	L domain-like	259	495	-	-
	Trre10g04469	983	SUPERFAMILY	L domain-like	31	259	-	-
	Trre10g04469	983	Gene3D	Transferase(Phosphotransferase) domain 1	664	885	-	-
	Trre10g04469	983	Gene3D	Ribonuclease Inhibitor	31	190	IPR032675	-
	Trre10g04469	983	FunFam	Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3	664	879	-	-
	Trre10g04469	983	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	709	721	IPR008271	GO:0004672\|GO:0006468
	Trre10g04469	983	Gene3D	Ribonuclease Inhibitor	191	502	IPR032675	-
	Trre10g04469	983	Pfam	Leucine rich repeat	264	323	IPR001611	GO:0005515
	Trre10g04469	983	ProSiteProfiles	Protein kinase domain profile.	587	880	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre10g04469	983	SUPERFAMILY	Protein kinase-like (PK-like)	573	874	IPR011009	-
	Trre10g04469	983	PANTHER	RECEPTOR KINASE-LIKE PROTEIN XA21	7	106	-	-
	Trre10g04469	983	FunFam	Probable leucine-rich repeat receptor-like protein kinase At2g33170	28	179	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre10g04469	Trre-Chr10	53820584	53823703	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre10g04469	39	874	Receptor kinase-like Gene Family	AT1G73080	44.237	0.0	657

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XI-1	Trre10g04469		Pkinase	1.2e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre10g04469	-		-	tpra:123924637	1090.1