Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04468 ATGACTAAAACTAGTTGTAACAGTAGAATTGTAAAACTCTTGTTGTTCATTATTTCCTTCTTGCGAGTTGGTTTTGCTCTTACCTCTGATGGTTTGACTTTGTTGTCACTCTTGAGAAAGTGGACTTTTGTTCCTCCTCTCAATGATAATAATTTCATCGGTCTTCGTCCTGATTTTGAAAGTAATCTGAACCTGAAATACATGGACATGAGAAAGAACAATATCAATGGACCGGTAACATCAAGTTTGGGAAATTGCAAAAACCTTACATACATTAATTTGTCATGGAACAAATTTTCAGGGCCAGTACCATCAGACCTTGGAAATCTTGTGAATCTTGCTCACAATAAATTCGAAGGTCCTTTTCCACTTAAGCTGTCAAATTGTACTAAAATGGATCGTTTTGATGTCGGATTCAATTTCCTAAATGGCTCATTCCCTTCAAGTTTGAGAAGTTGGACAAACACAAGTACATTGGTATTAAGAGAAAATCACATCATAGGAGGTATCCCAGTGTTTTTGGCAGAATTTGGTAACCTTCGCGAGTTACAACTTGGTGGAAATTTGATTGGCGGAAAAATTCCACGATCGGTTGGAACATTGCATAATTTGTTCTATGTGGATCTGAGTGCTAATAGATTGATAGGCGATATTCATTCAGAAATATGGAAGTTAGGAATGCTTATAAGTCTAGATATATCCTTGAACAATTTTACAGGATACGCAGATGCTCTTGAAGGTCTTGTTTCGTTAGTTTCGTTCAATACTTCTTCCAATTTGTTCTTTAACAGGAAGCTGTTGAATTCCTCGCCTTCATCATTGAGTTGCAATAAAACTGATTATTTGAATCAAACTGTTAGTGAGGGTTCTCGCAAAGTTAGTAAAGTTGGAATTGTGCTGATTGAACTTGGATCCTCAATATTTATTTCTGCCATCTTGGTAATTATAATTCGAATGTATCACCATAGAAAGGAATTGAAAAGGGCCTCTGATCTTAAGCAAATTTTTTTTAATGTAAGAGGTGAAGAAAGTTTTGAATTCATAAATGACAGTGATTATGAATTAAAGATCTCAACTGAAAAGGAGATCTCTTCCCTTCAAGAGAAAGTGCTGGAGGCTACAGAAAACCTAAAAGACGAGTATATTATTGGGAGAGGAGCACATGGTATTGTGTACAAAGCTATAATAGGTCAACAGGTTTGTGCTGTAAAGAAGCTTCAATTTGGACCCAACAAGCAAAAGCGGTTAAGTATCATGCGCAATGAAATTAAAGTTCTCAGGATTATTAAGCATCGAAACTTGATCAAATATTCTGGCTACTGGATTGGAGAAGACTATGGTTTAGTCTTGTTTGAGTTCATAGGAAATGGAAGCCTTCATGATATTTTGCATGAAAAGAAACCTCCCCCACTCTTAACGTGGAACGTTCGGTGTAAGATAGCGGCTGGAATTGCTCAAGGATTAGCATATCTGCATTATGATTGTGTTCTACCAATACTGCACCGAGACATCAAACCAAAGAACATACTTCTTAATGACAATATGGAACCTATTATAGCTGATTTTGGCACTTCCCTATGCAAGAAGCTTTCTGAGGATTCTAATACTTATTCTGAAACCAGGAAAATGCTTTCGTCGCATGTTGATGGCACCCCTGGCTATATTGCACCAGAGAATGTATATGATATAGTGCCGGGAAGAATGTCTGACGTATATAGCTATGGAGTTGTTTTGCTCGAGCTAATAACCAGAAAGAAATTATTAGTTCCGTCTACAAATGATGAGACGAACGAGATCCACATAGTGACCTGGGCTAGATCTGTAATGATGGATACAGGCAAGGTAGAGAACATTGTTGATCCATACCTTGTAAGTGCATTTCCCAATTCAATATCACTAGCCAAGAAAGTCACTGCAGTGCTTTCATTGGCATTACAATGCACAGAGAAGGATCCACAAATGAGGCCGACCATGAAAAGTGTTATCGACTTTTATAATAAAAACTTGTTTAATCCGAGGTGTGATGAGGTTCAATATGGTGGTCATGGACTTGTAATTAAATTGATGGGAAATGGTAAGATTCGGTCTGAAAAGGTTTTTGGGATCGCGAATTTAGTTGTTCCAAAAATAACCTATGCTTGGCCTAGTTTGATCTTTCTTCCTTCTATCACTGGTCCAATACTTAACAAACCTTTCAACTGGTTTTTCCTATCACGTTGGGTTCAATATAGGCACCTGCAGATATCCTTGTATTCACAGCCCAAATAA 2268 0.3735 MTKTSCNSRIVKLLLFIISFLRVGFALTSDGLTLLSLLRKWTFVPPLNDNNFIGLRPDFESNLNLKYMDMRKNNINGPVTSSLGNCKNLTYINLSWNKFSGPVPSDLGNLVNLAHNKFEGPFPLKLSNCTKMDRFDVGFNFLNGSFPSSLRSWTNTSTLVLRENHIIGGIPVFLAEFGNLRELQLGGNLIGGKIPRSVGTLHNLFYVDLSANRLIGDIHSEIWKLGMLISLDISLNNFTGYADALEGLVSLVSFNTSSNLFFNRKLLNSSPSSLSCNKTDYLNQTVSEGSRKVSKVGIVLIELGSSIFISAILVIIIRMYHHRKELKRASDLKQIFFNVRGEESFEFINDSDYELKISTEKEISSLQEKVLEATENLKDEYIIGRGAHGIVYKAIIGQQVCAVKKLQFGPNKQKRLSIMRNEIKVLRIIKHRNLIKYSGYWIGEDYGLVLFEFIGNGSLHDILHEKKPPPLLTWNVRCKIAAGIAQGLAYLHYDCVLPILHRDIKPKNILLNDNMEPIIADFGTSLCKKLSEDSNTYSETRKMLSSHVDGTPGYIAPENVYDIVPGRMSDVYSYGVVLLELITRKKLLVPSTNDETNEIHIVTWARSVMMDTGKVENIVDPYLVSAFPNSISLAKKVTAVLSLALQCTEKDPQMRPTMKSVIDFYNKNLFNPRCDEVQYGGHGLVIKLMGNGKIRSEKVFGIANLVVPKITYAWPSLIFLPSITGPILNKPFNWFFLSRWVQYRHLQISLYSQPK 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04468 755 Gene3D Ribonuclease Inhibitor 34 294 IPR032675 -
Trre10g04468 755 ProSiteProfiles Protein kinase domain profile. 377 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04468 755 PANTHER LEUCINE RICH REPEAT KINASE 2 47 662 - -
Trre10g04468 755 SUPERFAMILY L domain-like 6 263 - -
Trre10g04468 755 Pfam Protein kinase domain 380 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04468 755 ProSitePatterns Protein kinases ATP-binding region signature. 383 405 IPR017441 GO:0005524
Trre10g04468 755 SUPERFAMILY Protein kinase-like (PK-like) 366 663 IPR011009 -
Trre10g04468 755 Gene3D Transferase(Phosphotransferase) domain 1 454 673 - -
Trre10g04468 755 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 454 668 - -
Trre10g04468 755 Gene3D Phosphorylase Kinase; domain 1 356 453 - -
Trre10g04468 755 ProSitePatterns Serine/Threonine protein kinases active-site signature. 499 511 IPR008271 GO:0004672|GO:0006468
Trre10g04468 755 SMART serkin_6 377 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04468 755 Coils Coil 356 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04468 Trre-Chr10 53816539 53818962 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04468 47 662 Receptor kinase-like Gene Family AT1G73080 42.434 3.98e-142 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre10g04468 Pkinase 3.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04468 - - mtr:11435193 908.672