Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04465 ATGTCGTGTTCCCCACTGGTCATAGTGTTGAAGGCTATGGCTAAATTATTTGATTGCTATAACTTTTGCAGAGGAATTGTGCATAAAACCCACCTGGGTCGAGATTCGGAAATGGCTTCTGATCTTATGCAACAGTCTTATATTGAAAATGGAGGTACACTTAACCAACAGTCTGACAATGAAAGACGAGCTGCTCCGGCGTCCGATTTTAACAAATGGTCCTATTATATTGAAAAAGGAGTTGGAAGGATTGGAGTCACATATGCTCGTGAATTCAATATCTCATGCAAAGAGAAGCCGCTTACCCTTAAGGATGTAGTGTTGGAGGCTACTGAAAATCTAAATCAACGGTATATTATTGGCAAGGGAGGACATGGTACTGTGTACAAAGCCATGATTGGTCAACAGGTTTTTGCTGTAAAGAAGGTTGAATTTGGACGGAACAAGCAAAAGCGGCTGAGTATCATACGCAATGAAATTGAAGTCCTTGGGATGTTTAAGCATCGAAATTTGTTGAAACATGCAGACTACTGGATTGGTGAGGAATATGGTTTAGTCTTATGTGAATTCATGAAAAATGGAAGCCTTCATGATATTTTGCATGAAAAGAAACCACCACTACCCTTAACGTGGAATCTGATTTTTGGCACTGCCCTATGCAAGAAGGTGTTTGAGGATTCTAATAGTCATTCTACAATCCGGAAAATGCTTTCGTCACACGTTGTTGGTACTCCTGGCTATATTGCACCGGAGAATGCATATGATATTGTCCCGGGAAGAAAGTCGGATGTATATAGCTATGGTGTTGTTTTGCTCGAGCTATTAACCAGAAAGAAATTGTTAGTCCCCTCTTTGAATAATGATGCAGAGGAGACCCCCTTAGTGATCTGGGCTAAATCTGTATGGCTGGAAACAAACAAAATTGAGGAGATTGTTGATCCGGACCTTGCAAGTGAATTTTCCAATTCAGTAGAAATAGCCAAGCAAGTAGCTGCAGTCCTTTCATTGGCATTCCGATGCATAGAGAAGGATCCAGGAAAGCGGCCGAACATGAAAGGTGTTATTAGAATTTATAATAAGAACTTGTTTAAGCTGAGGCGTGATGGGGTTCAATATGTCGATGTGCTTGCAATTAAACTGATGGGAAATGGTAAGTTGCAGACAGAAAAGTTTGTTCGGATAGCTTCTCTAATTGTTCCAAAAATAACCTATTCTCCGCGTAGTTTAATCTTCCTTTCCTCTATCACTGGTCCAATACTTACCAAACCTTTCAACTGGTTTTTCCTATTACGTTGGAGTCAATATAGGCATCTACAGAAATCCTTGTACTCACAGACCAAATCATACTACTCTATAACTATAAACACTGATAAAACCAAGGCCACTGTCAAAATTAGCGAATAG 1404 0.3996 MSCSPLVIVLKAMAKLFDCYNFCRGIVHKTHLGRDSEMASDLMQQSYIENGGTLNQQSDNERRAAPASDFNKWSYYIEKGVGRIGVTYAREFNISCKEKPLTLKDVVLEATENLNQRYIIGKGGHGTVYKAMIGQQVFAVKKVEFGRNKQKRLSIIRNEIEVLGMFKHRNLLKHADYWIGEEYGLVLCEFMKNGSLHDILHEKKPPLPLTWNLIFGTALCKKVFEDSNSHSTIRKMLSSHVVGTPGYIAPENAYDIVPGRKSDVYSYGVVLLELLTRKKLLVPSLNNDAEETPLVIWAKSVWLETNKIEEIVDPDLASEFSNSVEIAKQVAAVLSLAFRCIEKDPGKRPNMKGVIRIYNKNLFKLRRDGVQYVDVLAIKLMGNGKLQTEKFVRIASLIVPKITYSPRSLIFLSSITGPILTKPFNWFFLLRWSQYRHLQKSLYSQTKSYYSITINTDKTKATVKISE 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04465 467 Pfam Protein kinase domain 118 204 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04465 467 Pfam Protein kinase domain 234 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04465 467 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 235 359 - -
Trre10g04465 467 Gene3D Transferase(Phosphotransferase) domain 1 219 372 - -
Trre10g04465 467 Gene3D Transferase(Phosphotransferase) domain 1 96 218 - -
Trre10g04465 467 ProSitePatterns Protein kinases ATP-binding region signature. 120 142 IPR017441 GO:0005524
Trre10g04465 467 SUPERFAMILY Protein kinase-like (PK-like) 101 356 IPR011009 -
Trre10g04465 467 ProSiteProfiles Protein kinase domain profile. 114 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04465 Trre-Chr10 53790971 53792613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04465 97 357 Receptor kinase-like Gene Family AT1G73080 36.424 9.66e-48 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Trre10g04465 Pkinase 1.5e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04465 - - mtr:11435193 685.256