LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre10g04459	ATGTCGGACGACATGCTTGTGCATTTTTCGTCGAATTCTTCTAACCAATCGGATCAGTCTCTGCCTACAAAGATTGCTAAGCTGGAAGCTCGAATGGTTGGAAAAGGTTCTTCCTCTGCTTCTCAGCAACAAGGCTGGTCTTCTGTTTCTTCAGCTGGGAAATTCAGTGGAGCGGCAGTTGAAGATTTGGTTGAACCTTGTACTTCAAGTGATTCTGACGACGATAATGGCAGGGAGTTCTTAATTCAAGCCAACACGCGTAAGCGCCCAAAACCTGAAAATGATGATGCCGATGTTTTTGAACGTTCTGAGGCTGTTACTGATGGAAGACAGACTAGTTTGGAGGCCGTGGAGACAAAAAATAATGTCGAAGCAAGTAGAAAGAGATCTGGTCGTGGAAGAGGGAATTCTGGTTCAGGTAGGGGCCGTGGATCCAAAAGTAATGATCAAACCAGATCACAAATTTCTCCCCCAACAGTTTCGGCTTCAAATGGTCAGAATGAGAATGATGGTAGAGTCAAAGATCAGTTTCATAATGATAATAGTGCTTCATTAGAGGAGGAGATTACATCTTTACGTGCAAGAATTGTTGTGTTGGAGGAAGACTTGCGTAAAGCAAAGCTAGAATCCTCTGAGAATCAGAATGCTCGTCAGCAGTTGGAAATGGAGCTAAAGGAACTGAAAGCTCTTGAACAACAAATGAAGCCTAAGAGAACAAAAATAATATCTGATTTGCTGATATCAGTTTCAAAAGCTGAAAGACAAGAAGCAAGGCTAAAAGTACGACAGGACTCATTGAGGCTTGGAAATGTTGGTGTAATCAGAGCTGGTACTATCATATCGGAGACCTGGGAAGATGGTCAGGCGTTAAAGGATCTTAATGCCCAGCTTAAACAACTAATAGAATCAAAAGAGGCAATTGAGCGCCAGCGGAAGCTATTCAAGAAAAAACAATCTGATAAGGGTGAAGGAATAGATGCAGAGGCTGGAATGCTGGAAGATATTCTCAGGCACGAGGAAATCTATAAGTGTCGACTAGCCAGCATTAAACGGGAAGAAGAAATTGTTTTGAGAGAGAGGGACCGCTACGAACTAGAGAAGGGAAGACTAATTCGTGAAATGAAACGCATACGGGATGAAGATGGTTCACGGTTCAACAACTTTCAGATTCTAAACCATCGTTATGCCCTTCTAAACCTTCTCGGAAAGGGAGGATTCAGCGAGGTGTACAAGGCTTTTGACTTGGTGGAGCATAGATATGTTGCCTGCAAACTTCATGGTTTAAATGCTCAATGGAGTGAAGAGAAGAAGCAAAGTTACATAAGGCATGCACTTCGAGAGTATAATATTCACAAGACATTGATTCACCCTCACATTGTTCGCTTATGGGATATCTTTGAGATTGATACGAATACATTCTGCACGGTTCTAGAGTATTGTAGTGGGAAAGATCTTGATGCTGTTCTTAAAGCAACGCCTACATTGCCCGAGAGGGAGGCTAGGGTCATTTTATCTCAGATTTTCCAAGGCCTTATTTACATGAATAAAAGAACACTGAAGATCATTCATTATGATTTAAAGCCTGGAAATGTTTTGTTTGATGAACTTGGGATTGCTAAAGTGACTGATTTTGGTCTTAGCAAGATAGTGGAGAATGATGTGGGATCCCAGGGTATGGAACTTACATCCCAGGGTGCTGGAACATATTGGTATTTGCCTCCTGAATGCTTTGAGCTGAGCAAGACACCACTTATATCATCCAAGGTTGATGTCTGGTCTGCGGGTATTTTGTTTTATCAAATGCTCTTTGGCAGACGTCCTTTCGGACATGACCAAACACAAGAGAGAATCCTCCGTGAAGACACAATTATTAAGGCACGCAAAGTTGAATTTCCCTCTAGGCCTACTGTTTCTAATGAGGCAAAGGATTTTATTCGGCGGTGTCTTACATATAACCAGGCCGAGAGGCCAGATGTATTAACCATCGCTCAAGATCCATATCTCGCTTACACAAAAAAGTAA	2022	0.4214	MSDDMLVHFSSNSSNQSDQSLPTKIAKLEARMVGKGSSSASQQQGWSSVSSAGKFSGAAVEDLVEPCTSSDSDDDNGREFLIQANTRKRPKPENDDADVFERSEAVTDGRQTSLEAVETKNNVEASRKRSGRGRGNSGSGRGRGSKSNDQTRSQISPPTVSASNGQNENDGRVKDQFHNDNSASLEEEITSLRARIVVLEEDLRKAKLESSENQNARQQLEMELKELKALEQQMKPKRTKIISDLLISVSKAERQEARLKVRQDSLRLGNVGVIRAGTIISETWEDGQALKDLNAQLKQLIESKEAIERQRKLFKKKQSDKGEGIDAEAGMLEDILRHEEIYKCRLASIKREEEIVLRERDRYELEKGRLIREMKRIRDEDGSRFNNFQILNHRYALLNLLGKGGFSEVYKAFDLVEHRYVACKLHGLNAQWSEEKKQSYIRHALREYNIHKTLIHPHIVRLWDIFEIDTNTFCTVLEYCSGKDLDAVLKATPTLPEREARVILSQIFQGLIYMNKRTLKIIHYDLKPGNVLFDELGIAKVTDFGLSKIVENDVGSQGMELTSQGAGTYWYLPPECFELSKTPLISSKVDVWSAGILFYQMLFGRRPFGHDQTQERILREDTIIKARKVEFPSRPTVSNEAKDFIRRCLTYNQAERPDVLTIAQDPYLAYTKK	673

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre10g04459	673	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	521	533	IPR008271	GO:0004672\|GO:0006468
	Trre10g04459	673	ProSiteProfiles	Protein kinase domain profile.	395	668	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre10g04459	673	Pfam	Protein kinase domain	396	668	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre10g04459	673	MobiDBLite	consensus disorder prediction	1	23	-	-
	Trre10g04459	673	FunFam	Serine/threonine-protein kinase TOUSLED	386	673	-	-
	Trre10g04459	673	CDD	STKc_TLK	394	667	-	-
	Trre10g04459	673	SMART	serkin_6	395	668	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre10g04459	673	PANTHER	MIXED LINEAGE PROTEIN KINASE	11	672	-	-
	Trre10g04459	673	MobiDBLite	consensus disorder prediction	1	177	-	-
	Trre10g04459	673	Coils	Coil	346	380	-	-
	Trre10g04459	673	Gene3D	Transferase(Phosphotransferase) domain 1	386	673	-	-
	Trre10g04459	673	MobiDBLite	consensus disorder prediction	35	54	-	-
	Trre10g04459	673	MobiDBLite	consensus disorder prediction	140	170	-	-
	Trre10g04459	673	ProSitePatterns	Protein kinases ATP-binding region signature.	401	424	IPR017441	GO:0005524
	Trre10g04459	673	SUPERFAMILY	Protein kinase-like (PK-like)	387	669	IPR011009	-
	Trre10g04459	673	MobiDBLite	consensus disorder prediction	71	105	-	-
	Trre10g04459	673	Coils	Coil	290	317	-	-
	Trre10g04459	673	MobiDBLite	consensus disorder prediction	106	120	-	-
	Trre10g04459	673	Coils	Coil	182	233	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre10g04459	Trre-Chr10	53742912	53749398	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre10g04459	378	673	MAP Kinase Kinase Kinase	AT3G13530	26.756	7.35e-28	118

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TLK	Trre10g04459		Pkinase	5e-60	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre10g04459	K08864		-	gmx:100789927	1095.49