LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre10g04458	ATGTCGGACGACATGCTTGTGCATTTTTCGTCGAATTCTTCTAACCAATCGGATCAGTCTCTGCCTACAAAGATTGCTAAGCTGGAAGCTCGAATGGTTGGAAAAGGTTCTTCCTCTGCTTCTCAGCAACAAGGCTGGTCTTCTGTTTCTTCAGCTGGGAAATTCAGTGGAGCGGCAGTTGAAGATTTGGTTGAACCTTGTACTTCAAGTGATTCTGACGACGATAATGGCAGGGAGTTCTTAATTCAAGCCAACACGCGTAAGCGCCCAAAACCTGAAAATGATGATGCCGATGTTTTTGAACGTTCTGAGGCTGTTACTGATGGAAGACAGACTAGTTTGGAGGCCGTGGAGACAAAAAATAATGTCGAAGCAAGTAGAAAGAGATCTGGTCGTGGAAGAGGGAATTCTGGTTCAGGTAGGGGCCGTGGATCCAAAAGTAATGATCAAACCAGATCACAAATTTCTCCCCCAACAGTTTCGGCTTCAAATGGTCAGAATGAGAATGTATTGCATAAAGATGGTAGAGTCAAAGATCAGTTTCATAATGATAATAGTGCTTCATTAGAGGAGGAGATTACATCTTTACGTGCAAGAATTGTTGTGTTGGAGGAAGACTTGCGTAAAGCAAAGCTAGAATCCTCTGAGAATCAGAATGCTCGTCAGCAGTTGGAAATGGAGCTAAAGGAACTGAAAGCTCTTGAACAACAAATGAAGCCTAAGAGAACAAAAATAATATCTGATTTGCTGATATCAGTTTCAAAAGCTGAAAGACAAGAAGCAAGGCTAAAAGTACGACAGGACTCATTGAGGCTTGGAAATGTTGGTGTAATCAGAGCTGGTACTATCATATCGGAGACCTGGGAAGATGGTCAGGCGTTAAAGGATCTTAATGCCCAGCTTAAACAACTAATAGAATCAAAAGAGGCAATTGAGCGCCAGCGGAAGCTATTCAAGAAAAAACAATCTGATAAGGGTGAAGGAATAGATGCAGAGGCTGGAATGCTGGAAGATATTCTCAGGCACGAGGAAATCTATAAGTGTCGACTAGCCAGCATTAAACGGGAAGAAGAAATTGTTTTGAGAGAGAGGGACCGCTACGAACTAGAGAAGGGAAGACTAATTCGTGAAATGAAACGCATACGGGATGAAGATGGTTCACGGTTCAACAACTTTCAGATTCTAAACCATCGTTATGCCCTTCTAAACCTTCTCGGAAAGGGAGGATTCAGCGAGGTGTACAAGGCTTTTGACTTGGTGGAGCATAGATATGTTGCCTGCAAACTTCATGGTTTAAATGCTCAATGGAGTGAAGAGAAGAAGCAAAGTTACATAAGGCATGCACTTCGAGAGTATAATATTCACAAGACATTGATTCACCCTCACATTGTTCGCTTATGGGATATCTTTGAGATTGATACGAATACATTCTGCACGGTTCTAGAGTATTGTAGTGGGAAAGATCTTGATGCTGTTCTTAAAGCAACGCCTACATTGCCCGAGAGGGAGGCTAGGGTCATTTTATCTCAGATTTTCCAAGGCCTTATTTACATGAATAAAAGAACACTGAAGATCATTCATTATGATTTAAAGCCTGGAAATGTTTTGTTTGATGAACTTGGGATTGCTAAAGTGACTGATTTTGGTCTTAGCAAGATAGTGGAGAATGATGTGGGATCCCAGGGTATGGAACTTACATCCCAGGGTGCTGGAACATATTGGTATTTGCCTCCTGAATGCTTTGAGCTGAGCAAGACACCACTTATATCATCCAAGGTTGATGTCTGGTCTGCGGGTATTTTGTTTTATCAAATGCTCTTTGGCAGACGTCCTTTCGGACATGACCAAACACAAGAGAGAATCCTCCGTGAAGACACAATTATTAAGGCACGCAAAGTTGAATTTCCCTCTAGGCCTACTGTTTCTAATGAGGCAAAGGATTTTATTCGGCGGTGTCTTACATATAACCAGGCCGAGAGGCCAGATGTATTAACCATCGCTCAAGATCCATATCTCGCTTACACAAAAAAGTAA	2034	0.4204	MSDDMLVHFSSNSSNQSDQSLPTKIAKLEARMVGKGSSSASQQQGWSSVSSAGKFSGAAVEDLVEPCTSSDSDDDNGREFLIQANTRKRPKPENDDADVFERSEAVTDGRQTSLEAVETKNNVEASRKRSGRGRGNSGSGRGRGSKSNDQTRSQISPPTVSASNGQNENVLHKDGRVKDQFHNDNSASLEEEITSLRARIVVLEEDLRKAKLESSENQNARQQLEMELKELKALEQQMKPKRTKIISDLLISVSKAERQEARLKVRQDSLRLGNVGVIRAGTIISETWEDGQALKDLNAQLKQLIESKEAIERQRKLFKKKQSDKGEGIDAEAGMLEDILRHEEIYKCRLASIKREEEIVLRERDRYELEKGRLIREMKRIRDEDGSRFNNFQILNHRYALLNLLGKGGFSEVYKAFDLVEHRYVACKLHGLNAQWSEEKKQSYIRHALREYNIHKTLIHPHIVRLWDIFEIDTNTFCTVLEYCSGKDLDAVLKATPTLPEREARVILSQIFQGLIYMNKRTLKIIHYDLKPGNVLFDELGIAKVTDFGLSKIVENDVGSQGMELTSQGAGTYWYLPPECFELSKTPLISSKVDVWSAGILFYQMLFGRRPFGHDQTQERILREDTIIKARKVEFPSRPTVSNEAKDFIRRCLTYNQAERPDVLTIAQDPYLAYTKK	677

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre10g04458	677	MobiDBLite	consensus disorder prediction	1	23	-	-
	Trre10g04458	677	ProSitePatterns	Protein kinases ATP-binding region signature.	405	428	IPR017441	GO:0005524
	Trre10g04458	677	Coils	Coil	350	384	-	-
	Trre10g04458	677	MobiDBLite	consensus disorder prediction	1	169	-	-
	Trre10g04458	677	ProSiteProfiles	Protein kinase domain profile.	399	672	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre10g04458	677	Pfam	Protein kinase domain	400	672	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre10g04458	677	MobiDBLite	consensus disorder prediction	140	169	-	-
	Trre10g04458	677	CDD	STKc_TLK	398	671	-	-
	Trre10g04458	677	Coils	Coil	294	321	-	-
	Trre10g04458	677	Coils	Coil	186	237	-	-
	Trre10g04458	677	MobiDBLite	consensus disorder prediction	35	54	-	-
	Trre10g04458	677	SUPERFAMILY	Protein kinase-like (PK-like)	391	673	IPR011009	-
	Trre10g04458	677	FunFam	Serine/threonine-protein kinase TOUSLED	390	677	-	-
	Trre10g04458	677	MobiDBLite	consensus disorder prediction	71	105	-	-
	Trre10g04458	677	MobiDBLite	consensus disorder prediction	106	120	-	-
	Trre10g04458	677	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	525	537	IPR008271	GO:0004672\|GO:0006468
	Trre10g04458	677	PANTHER	MIXED LINEAGE PROTEIN KINASE	11	676	-	-
	Trre10g04458	677	Gene3D	Transferase(Phosphotransferase) domain 1	390	677	-	-
	Trre10g04458	677	SMART	serkin_6	399	672	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre10g04458	Trre-Chr10	53742912	53749398	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre10g04458	382	677	MAP Kinase Kinase Kinase	AT3G13530	26.756	6.49e-28	118

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TLK	Trre10g04458		Pkinase	5.1e-60	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre10g04458	K08864		-	gmx:100789927	1107.43