Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04429 ATGAAACTAAAAAATGTGTTACTATTGGTCTTTCTGTTTCTAGAGTGTGTTTTATTCAAAGTTGAATCAAAGTGTGTGAAAGGGTGCGATATAGCTTTAGCTTCTTACTATGTCTTACCTTTAGTTGAACTTCCAACTGTGAAAAACTTTATGCAATCAAAGATTGTTACAAATTCTTCTGATATTTTAAATAAATACAATAAAATCTTAGTAACCAATCATGGTAATATTTTTTCATTTTTTAGAATCAATATTCCATTCCCATGTGAATGTATTGGAGGTGAATTTCTTGGTCATGTGTTTGAATATACAGCAAAAGAAGGAGATACTTATGATTTGATTGCTAATACTTATTATGTAAGTTTAACTACTGTTGAGCTTTTGAAAAAGTTCAATAGCTATGATCCAAATCATATACCTGCTAAGGCTAAGGTTAATGTTACTGTCAATTGTTCTTGTGGGAATAGCCAGGTTTCAAAAGATTATGGCTTGTTTATTACCTATCCACTTAGAACTGGTGATACTCTTCAGAAGATTGCAAATGAGTCTAAACTTGATGAAGGGTTGTTACAGAATTACAATCCTGGTGTCGATTTCGGCAAAGAGAGTGGGATTGTGTTCATTCCAGGAAGAGATCAAAATGGAAATTATGTTCCCTTATATCCTAGACACATTAAGAAGAAGGAAGAAGAGAAAGATAAACTTCCCCAAACTTCTATGAAACTTTCAACTCAAGATGAATCCTCAGGTAGTGGAGAATATGAAACTTCAGGATCCAGTGGAGCTGGTAGTGTTGCTGGCCTTACAGGTATTATGGTAGCAAAGTCAACAGAGTTTTCCTATCAAGAACTAGCCAAAGCTACAAATAACTTCAACTTGAGTCATAAAATTGGTCAAGGTGGATTTGGAGCTGTCTATTATGCAGAACTTAGAGGCGAGAAAACAGCGATTAAGAAGATGGATGTACAAGCATCGACAGAATTTCTTTGTGAGTTGAAAGTCTTAACACATGTTCATCACTTGAATCTGGTACGGTTGATTGGATATTGCGTTGAGGGATCACTTTTCCTTGTATATGAACATATTGACAATGGAAACTTGGGTCAATATTTGCACGGAATAGGTAAGGAACCATTACCGTGGTCAAGTAGAGTTCAAATTGCTCTAGATTCAGCAAGAGGCCTTGAATACATTCATGAGCACACTGTGCCTGTGTATATCCATCGTGATGTAAAATCAGCAAATATACTGATAGACAAAAACTTGCGCGGAAAGGTTGCAGATTTTGGATTAACCAAACTTATTGAAGTTGGAAGCTCCACACTTCACACTCGTCTTGTTGGAACTTTCGGATACATGCCACCAGAGTATGCTCAATATGGCGATGTTTCACCAAAAATAGATGTATATGCTTTTGGAGTTGTTCTTTTTGAACTTATTTCTGCAAAGAATGCTGTTCTAAGGACAGGTGAAACTGTTGCGGAATCAAAGGGTCTTGTAGCCTTGTTTGGAGAAGCACTTAATCAGATTGATCCTTTAGAAGGTCTTCGCAAACATGTGGATCCTAGGCTTAAAGAAAACTATCCTATTGAAGATGTTCTCAAGATGGCTGAACTTGGAAGAGCATGTACAAGAGACAATCCACTACTACGTCCAAGTATGAGATCTATAGTTGTTTCTCTTATGACACTCTCATCACCAACTGAAGATTGTGATGATGACACTTCCTATGAAAATCAAACTATCATAAATCTATTGTCAGTGAGATGA 1770 0.3621 MKLKNVLLLVFLFLECVLFKVESKCVKGCDIALASYYVLPLVELPTVKNFMQSKIVTNSSDILNKYNKILVTNHGNIFSFFRINIPFPCECIGGEFLGHVFEYTAKEGDTYDLIANTYYVSLTTVELLKKFNSYDPNHIPAKAKVNVTVNCSCGNSQVSKDYGLFITYPLRTGDTLQKIANESKLDEGLLQNYNPGVDFGKESGIVFIPGRDQNGNYVPLYPRHIKKKEEEKDKLPQTSMKLSTQDESSGSGEYETSGSSGAGSVAGLTGIMVAKSTEFSYQELAKATNNFNLSHKIGQGGFGAVYYAELRGEKTAIKKMDVQASTEFLCELKVLTHVHHLNLVRLIGYCVEGSLFLVYEHIDNGNLGQYLHGIGKEPLPWSSRVQIALDSARGLEYIHEHTVPVYIHRDVKSANILIDKNLRGKVADFGLTKLIEVGSSTLHTRLVGTFGYMPPEYAQYGDVSPKIDVYAFGVVLFELISAKNAVLRTGETVAESKGLVALFGEALNQIDPLEGLRKHVDPRLKENYPIEDVLKMAELGRACTRDNPLLRPSMRSIVVSLMTLSSPTEDCDDDTSYENQTIINLLSVR 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04429 589 SUPERFAMILY Protein kinase-like (PK-like) 274 561 IPR011009 -
Trre10g04429 589 SMART LysM_2 102 148 IPR018392 -
Trre10g04429 589 SMART LysM_2 167 209 IPR018392 -
Trre10g04429 589 FunFam PTI1-like tyrosine-protein kinase 3 362 575 - -
Trre10g04429 589 Gene3D Phosphorylase Kinase; domain 1 271 361 - -
Trre10g04429 589 FunFam LysM receptor kinase 2 270 361 - -
Trre10g04429 589 ProSiteProfiles LysM domain profile. 101 147 IPR018392 -
Trre10g04429 589 MobiDBLite consensus disorder prediction 227 261 - -
Trre10g04429 589 ProSiteProfiles Protein kinase domain profile. 291 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04429 589 ProSitePatterns Serine/Threonine protein kinases active-site signature. 406 418 IPR008271 GO:0004672|GO:0006468
Trre10g04429 589 SMART serkin_6 291 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04429 589 MobiDBLite consensus disorder prediction 238 261 - -
Trre10g04429 589 Pfam Protein tyrosine and serine/threonine kinase 292 559 IPR001245 GO:0004672|GO:0006468
Trre10g04429 589 ProSitePatterns Protein kinases ATP-binding region signature. 297 319 IPR017441 GO:0005524
Trre10g04429 589 Pfam LysM domain 103 141 IPR018392 -
Trre10g04429 589 Pfam LysM domain 171 197 IPR018392 -
Trre10g04429 589 CDD LysM 103 132 IPR018392 -
Trre10g04429 589 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 5 574 IPR044812 GO:0019199|GO:0045087
Trre10g04429 589 Gene3D Transferase(Phosphotransferase) domain 1 362 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04429 Trre-Chr10 53523795 53527357 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04429 1 589 Receptor kinase-like Gene Family AT3G21630 52.818 0.0 629
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre10g04429 PK_Tyr_Ser-Thr 1.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04429 - K13429 gmx:100776847 883.634