LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre10g04428	ATGAAACTAAAAAATGTGTTACTATTGGTCTTTCTGTTTCTAGAGTGTGTTTTATTCAAAGTTGAATCAAAGTGTGTGAAAGGGTGCGATATAGCTTTAGCTTCTTACTATGTCTTACCTTTAGTTGAACTTCCAACTGTGAAAAACTTTATGCAATCAAAGATTGTTACAAATTCTTCTGATATTTTAAATAAATACAATAAAATCTTAGTAACCAATCATGGTAATATTTTTTCATTTTTTAGAATCAATATTCCATTCCCATGTGAATGTATTGGAGGTGAATTTCTTGGTCATGTGTTTGAATATACAGCAAAAGAAGGAGATACTTATGATTTGATTGCTAATACTTATTATGTAAGTTTAACTACTGTTGAGCTTTTGAAAAAGTTCAATAGCTATGATCCAAATCATATACCTGCTAAGGCTAAGGTTAATGTTACTGTCAATTGTTCTTGTGGGAATAGCCAGGTTTCAAAAGATTATGGCTTGTTTATTACCTATCCACTTAGAACTGGTGATACTCTTCAGAAGATTGCAAATGAGTCTAAACTTGATGAAGGGTTGTTACAGAATTACAATCCTGGTGTCGATTTCGGCAAAGAGAGTGGGATTGTGTTCATTCCAGGAAGAGATCAAAATGGAAATTATGTTCCCTTATATCCTAGACACATTAAGAAGAAGGAAGAAGAGAAAGATAAACTTCCCCAAACTTCTATGAAACTTTCAACTCAAGATGGTAATGAATCCTCAGGTAGTGGAGAATATGAAACTTCAGGATCCAGTGGAGCTGGTAGTGTTGCTGGCCTTACAGGTATTATGGTAGCAAAGTCAACAGAGTTTTCCTATCAAGAACTAGCCAAAGCTACAAATAACTTCAACTTGAGTCATAAAATTGGTCAAGGTGGATTTGGAGCTGTCTATTATGCAGAACTTAGAGGCGAGAAAACAGCGATTAAGAAGATGGATGTACAAGCATCGACAGAATTTCTTTGTGAGTTGAAAGTCTTAACACATGTTCATCACTTGAATCTGGTACGGTTGATTGGATATTGCGTTGAGGGATCACTTTTCCTTGTATATGAACATATTGACAATGGAAACTTGGGTCAATATTTGCACGGAATAGGTAAGGAACCATTACCGTGGTCAAGTAGAGTTCAAATTGCTCTAGATTCAGCAAGAGGCCTTGAATACATTCATGAGCACACTGTGCCTGTGTATATCCATCGTGATGTAAAATCAGCAAATATACTGATAGACAAAAACTTGCGCGGAAAGGTTGCAGATTTTGGATTAACCAAACTTATTGAAGTTGGAAGCTCCACACTTCACACTCGTCTTGTTGGAACTTTCGGATACATGCCACCAGAGTATGCTCAATATGGCGATGTTTCACCAAAAATAGATGTATATGCTTTTGGAGTTGTTCTTTTTGAACTTATTTCTGCAAAGAATGCTGTTCTAAGGACAGGTGAAACTGTTGCGGAATCAAAGGGTCTTGTAGCCTTGTTTGGAGAAGCACTTAATCAGATTGATCCTTTAGAAGGTCTTCGCAAACATGTGGATCCTAGGCTTAAAGAAAACTATCCTATTGAAGATGTTCTCAAGATGGCTGAACTTGGAAGAGCATGTACAAGAGACAATCCACTACTACGTCCAAGTATGAGATCTATAGTTGTTTCTCTTATGACACTCTCATCACCAACTGAAGATTGTGATGATGACACTTCCTATGAAAATCAAACTATCATAAATCTATTGTCAGTGAGATGA	1776	0.362	MKLKNVLLLVFLFLECVLFKVESKCVKGCDIALASYYVLPLVELPTVKNFMQSKIVTNSSDILNKYNKILVTNHGNIFSFFRINIPFPCECIGGEFLGHVFEYTAKEGDTYDLIANTYYVSLTTVELLKKFNSYDPNHIPAKAKVNVTVNCSCGNSQVSKDYGLFITYPLRTGDTLQKIANESKLDEGLLQNYNPGVDFGKESGIVFIPGRDQNGNYVPLYPRHIKKKEEEKDKLPQTSMKLSTQDGNESSGSGEYETSGSSGAGSVAGLTGIMVAKSTEFSYQELAKATNNFNLSHKIGQGGFGAVYYAELRGEKTAIKKMDVQASTEFLCELKVLTHVHHLNLVRLIGYCVEGSLFLVYEHIDNGNLGQYLHGIGKEPLPWSSRVQIALDSARGLEYIHEHTVPVYIHRDVKSANILIDKNLRGKVADFGLTKLIEVGSSTLHTRLVGTFGYMPPEYAQYGDVSPKIDVYAFGVVLFELISAKNAVLRTGETVAESKGLVALFGEALNQIDPLEGLRKHVDPRLKENYPIEDVLKMAELGRACTRDNPLLRPSMRSIVVSLMTLSSPTEDCDDDTSYENQTIINLLSVR	591

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre10g04428	591	SMART	LysM_2	102	148	IPR018392	-
	Trre10g04428	591	SMART	LysM_2	167	209	IPR018392	-
	Trre10g04428	591	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	408	420	IPR008271	GO:0004672\|GO:0006468
	Trre10g04428	591	ProSiteProfiles	LysM domain profile.	101	147	IPR018392	-
	Trre10g04428	591	SMART	serkin_6	293	565	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre10g04428	591	SUPERFAMILY	Protein kinase-like (PK-like)	276	563	IPR011009	-
	Trre10g04428	591	MobiDBLite	consensus disorder prediction	238	263	-	-
	Trre10g04428	591	MobiDBLite	consensus disorder prediction	227	263	-	-
	Trre10g04428	591	Gene3D	Phosphorylase Kinase; domain 1	273	363	-	-
	Trre10g04428	591	Gene3D	Transferase(Phosphotransferase) domain 1	364	587	-	-
	Trre10g04428	591	ProSitePatterns	Protein kinases ATP-binding region signature.	299	321	IPR017441	GO:0005524
	Trre10g04428	591	ProSiteProfiles	Protein kinase domain profile.	293	566	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre10g04428	591	FunFam	LysM receptor kinase 2	272	363	-	-
	Trre10g04428	591	Pfam	LysM domain	171	197	IPR018392	-
	Trre10g04428	591	Pfam	LysM domain	103	141	IPR018392	-
	Trre10g04428	591	CDD	LysM	103	132	IPR018392	-
	Trre10g04428	591	PANTHER	CHITIN ELICITOR RECEPTOR KINASE 1-RELATED	5	576	IPR044812	GO:0019199\|GO:0045087
	Trre10g04428	591	Pfam	Protein tyrosine and serine/threonine kinase	294	561	IPR001245	GO:0004672\|GO:0006468
	Trre10g04428	591	FunFam	PTI1-like tyrosine-protein kinase 3	364	577	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre10g04428	Trre-Chr10	53523795	53527357	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre10g04428	1	591	Receptor kinase-like Gene Family	AT3G21630	52.970	0.0	626

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LysM	Trre10g04428		PK_Tyr_Ser-Thr	1.8e-42	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre10g04428	-		K13429	gmx:100776847	882.863