Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04427 ATGCAATCAAAGATTGCTAAAATTTCTCCTAAGGTTATAATGAGCTATAATAAAGACATAGTATTCAGTAATGCTAATCTTTTTTCATATTTTAGAATCAACATTCCATTCCCATGTGAATGTATTGGAGGCGAATTTCTTGGTCATGTGTTTGAGTATTCGGTTTCTGAAGGAGATACTTATGATTTGATTGCAAATACTTATTATGCAAGTTTGACAAGTGTTGAGGTCTTGAAAAAGTACAATAGTTATGATCCAAATCATATACCTGCTAAGGCTAAGGTTAATGTTACTGTTAATTGTTCTTGTGGAAATAGTCAGATTTCAAAAGATTATGGCTTGTTTATTACCTATCCACTTAATCCTAAGGATACTCTTCAAAAAATTGCAAGTGATTCTAAATTTGATGAAGGGGTGATACAGAGTTACAATTCTGGTGTCAATTTTAGCAAAGGGAGTGGGATTGTGTTCATTCCAGGAAGAGATCAAAATGGAGATTATGTTCCCTTGTATCCTAGATACTTCCAAAAGAAGAAACAAGCGAAAACTAAACTTCCCGAAACTTCTATGGTGTCTTCATCTCAAGATGTTGATAAGAATACTAATGGTGAAAAAGGAGCCAAATTAATTGTGGTAGACAAATCACCTGAATTTTCATACAAAGAACTAGCCAATGCTACTGATAACTTCAGTTTGGCTAACAAAATTGGTCAAGGTGGTTTTGGAGAGGTCTACTTTGGAGAGCTGAGAGGCAAGAAAACTGCAATAAAAAAGATGAAGATCCAAGCAAGAAGAGAATTTCTTGCTGAACTCAAAGTCTTAACAAGTGTTCATCACTGGAACCTGGTACACTTGATAGGATATTGTGTTGAGGGATCTCTATTCCTTGTGTATGAATTCATAGACAATGGAAACTTAAGCCAACATCTACATAATTCAGCGAAAGAGCCGATGACATGGTCTACAAGGGTGCAAATTGCTCTTGATGTTGCGAGAGGCCTCGAGTATATTCATGATCATTCAGTTCCTGTATATATCCACCGTGACATTAAATCAGATAACATTTTATTAAATGAAAACTTCACTGCGAAGATTGCTGATTTTGGATTAACCAAGCTGACTGATATTGCAAGTTCAACAGATAAAACTGATCATATGGCAGGCACATTTGGTTACATGCCACCTGAAAATGTATATGGACGTATTTCTCGCAAGATAGATGTATATGCTTTTGGAGTTGTTCTTTATGAACTAATTTCTGCTAAAACGGCTGTGATCAAGATTGATATAATCGAGTACGAGTTCAAGAGCCTTGAGATTAAGACCGATGAATCTGTTGATGAATACAAGAGCCTTGTAGCTTTGTTTGATGAAGTTATTGATGAAGAAGGAAATCCTATAGAAGAAGGTCTAAGAAAACTGGTCGATCCAAGGCTAGGAGATAACTATTCAATTAATTCCATCAACAAGATGACACAACTTGCCAAGGCTTGCATAAACCGAGATCCGAAACAACTTCCAACAATGAGATCTGTTGTAGTTTCTCTTATGAAACTAAATTCAACAGTTTATGATGGTAGTAGGACAGATAGTGCATCATTGAGTCTTACTATGGAGCATGACTCAAATTCAAATGAAATTCCAATGTGA 1650 0.3558 MQSKIAKISPKVIMSYNKDIVFSNANLFSYFRINIPFPCECIGGEFLGHVFEYSVSEGDTYDLIANTYYASLTSVEVLKKYNSYDPNHIPAKAKVNVTVNCSCGNSQISKDYGLFITYPLNPKDTLQKIASDSKFDEGVIQSYNSGVNFSKGSGIVFIPGRDQNGDYVPLYPRYFQKKKQAKTKLPETSMVSSSQDVDKNTNGEKGAKLIVVDKSPEFSYKELANATDNFSLANKIGQGGFGEVYFGELRGKKTAIKKMKIQARREFLAELKVLTSVHHWNLVHLIGYCVEGSLFLVYEFIDNGNLSQHLHNSAKEPMTWSTRVQIALDVARGLEYIHDHSVPVYIHRDIKSDNILLNENFTAKIADFGLTKLTDIASSTDKTDHMAGTFGYMPPENVYGRISRKIDVYAFGVVLYELISAKTAVIKIDIIEYEFKSLEIKTDESVDEYKSLVALFDEVIDEEGNPIEEGLRKLVDPRLGDNYSINSINKMTQLAKACINRDPKQLPTMRSVVVSLMKLNSTVYDGSRTDSASLSLTMEHDSNSNEIPM 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04427 549 FunFam LysM receptor kinase 2 209 300 - -
Trre10g04427 549 Pfam LysM domain 53 91 IPR018392 -
Trre10g04427 549 ProSiteProfiles Protein kinase domain profile. 230 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04427 549 ProSitePatterns Protein kinases ATP-binding region signature. 236 258 IPR017441 GO:0005524
Trre10g04427 549 Pfam Protein tyrosine and serine/threonine kinase 232 422 IPR001245 GO:0004672|GO:0006468
Trre10g04427 549 SUPERFAMILY Protein kinase-like (PK-like) 210 516 IPR011009 -
Trre10g04427 549 FunFam PTI1-like tyrosine-protein kinase 3 301 530 - -
Trre10g04427 549 SMART serkin_6 230 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04427 549 Gene3D Phosphorylase Kinase; domain 1 210 300 - -
Trre10g04427 549 ProSitePatterns Serine/Threonine protein kinases active-site signature. 345 357 IPR008271 GO:0004672|GO:0006468
Trre10g04427 549 Gene3D Transferase(Phosphotransferase) domain 1 301 539 - -
Trre10g04427 549 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 5 528 IPR044812 GO:0019199|GO:0045087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04427 Trre-Chr10 53495697 53498689 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04427 32 522 Receptor kinase-like Gene Family AT3G21630 50.659 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre10g04427 PK_Tyr_Ser-Thr 8.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04427 - K13429 tpra:123920651 914.064